Microbacterium limosum: RYJ27_06200
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Entry
RYJ27_06200 CDS
T09965
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
mliy
Microbacterium limosum
Brite
KEGG Orthology (KO) [BR:
mliy00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
mliy03016
]
RYJ27_06200
Enzymes [BR:
mliy01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
RYJ27_06200
Transfer RNA biogenesis [BR:
mliy03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
RYJ27_06200
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Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
DNA_pol_A_exoN
HRDC
TPR_14
TPR_10
Motif
Other DBs
NCBI-ProteinID:
WOQ70943
UniProt:
A0AAU0MKF1
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Position
complement(1286480..1287661)
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AA seq
393 aa
AA seq
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MIDEAPGFARACTALAAGHGPVAVDVERASGFRYSQRAYLIQVFRRGAGAFLFDPPALGD
FAPLQAAIGDAEWVLHAASQDLPSLREAGLEPAAIFDTELAARLLGRERVGLGAVVEEEL
GIALAKAHSAADWSTRPLPDSWLEYAVLDVLHLVDVRDRLAAALAEQGKTEIAEEEFRAV
LERPARPPREDPWRRLSGLHTVRGRRALAVARELWTAREDYAREVDTSPGRLVPDRALVA
AVLADPATKQALASVKEFTGRASRSQLDRWWQAIERGRACSELPIERVSGDGPPPPRVWR
DRNPAADARLKAAKPAVDAVAAELGMPVENLLTPDSLRRLSWSPPEPLDAASVGAALATL
GARRWQIERTAQTIVEAFVDSTQEPPSAPEEAS
NT seq
1182 nt
NT seq
+upstream
nt +downstream
nt
gtgatcgacgaggcccccggattcgcccgcgcgtgcaccgcactggctgccggccacggg
cccgtcgccgtcgacgtcgagcgagcatccggtttccggtactcgcagcgggcctatctc
atccaggtcttccgccggggcgcgggcgccttcctcttcgacccgccggcgctcggcgac
ttcgcccccctgcaggcggcgatcggcgacgcggagtgggtgctgcacgcagcgagccag
gatctgccctcgctgcgcgaggcggggctggaaccggcggccatcttcgacaccgagctg
gcggcgcggctgctcggccgggagcgcgtcgggctgggcgcggtcgtcgaggaggaactc
ggcatcgccctggccaaggcgcactcggcggccgactggtccacacgcccgctgcccgac
tcgtggctcgaatacgccgtgctcgatgtgctccacctggtcgacgtgcgcgaccggctc
gccgcggcgctcgcagagcagggcaagacggagatcgcggaggaggagttccgggccgtg
ctggaacggcccgcgcggcctccccgggaggacccgtggcgacggctgagcgggctccac
acggtgcgaggacgacgagcgctcgccgtcgcccgcgagctgtggacggcccgcgaggac
tatgcgcgcgaggtcgatacgtcccccggccgtctcgtccccgaccgcgctctcgtcgcg
gcggtgctcgcagatccggccaccaagcaggcgctcgcctcggtcaaggagttcacgggg
agggcgagccgcagccagctcgaccgctggtggcaggccatcgagaggggtcgcgcgtgc
tcggagcttcccatcgagcgggtctccggcgacggaccgcccccgccgcgggtctggcgc
gaccgcaatcccgccgccgacgcgaggctcaaggccgccaagccggccgtggatgccgtg
gccgccgagctcgggatgccggtggagaatctgctcactcccgactcgctccggcgcctc
tcctggagcccacccgagccgctcgacgccgcctccgtcggggctgcactcgcgaccctc
ggcgcgcgccgctggcagattgagcggactgcacagacgatcgtcgaagcctttgtcgat
tccacacaagagcctccgagcgcccccgaagaggcctcgtag
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