KEGG   Microbacterium limosum: RYJ27_07605
Entry
RYJ27_07605       CDS       T09965                                 
Name
(GenBank) ATP-dependent DNA ligase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
mliy  Microbacterium limosum
Pathway
mliy03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:mliy00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    RYJ27_07605
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:mliy03400]
    RYJ27_07605
Enzymes [BR:mliy01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     RYJ27_07605
DNA repair and recombination proteins [BR:mliy03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     RYJ27_07605
SSDB
Motif
Pfam: LigD_Prim-Pol DNA_ligase_A_M LigD_N DNA_ligase_A_C DNA_primase_S
Other DBs
NCBI-ProteinID: WOQ68591
UniProt: A0AAU0MEL9
LinkDB
Position
1559168..1561696
AA seq 842 aa
MAGEQIVQIGGRRLRVTNLEKVLYPETGTTKAEVIDYYSRIAGWMIPHLAGRPVTRKRWP
DGVGTAAEPLEAFFAKDLEPGAPDWLPRQSIAHSGGPKDYPLVTDVAALVYLAQVASLEL
HVPQWRFRADGERANPDRLVLDLDPGPGVGLAECAEVARVCRDILAGMGMAAHPVTSGSK
GIHLYAALPGEQTSDQITAFAKELARAVEADHPDLVVSAMSKALRPGRVFIDWSQNNGSK
TTIAPYSLRGRPEPTVAAPRTWAELEDAGLRHLLFSEVLERAEADGDPLAALGAPGLGTG
GPLAAYIAKRDAGRTPEPVPAEPTGRPARPEERPRFVIQEHHASRLHWDLRLERDGVLAS
WAVPRGVPPTSARNNLAVQTEDHPMEYASFSGVIPAGQYGAGTMTIWDEGRYDLEKWRDD
EVIATLEGRPGGPLGTVRLALIRTDGAGEKSTWLLHRMKTDAAGRAQPDGAPVEPADHAG
LGATAEPSVPGPEPPSAPDPESPPAPTAGPPPPDAGRHTPMLATSATPGIARATARRTAE
AAGTAPWVEFKWDGIRAIGVWNGSSLRLLTRTGTDVTARYPEVTAAAPAVFGSVPLVVDG
ELVALDETGRPSFPLLQNRMNLARDADIARETSRTPVTYYLFDVIERDGADTAALPLHRR
RELLEGSLSPGETVRIPPVVDDVDAALDTAREFALEGIVVKDPAAPYRRGIRTEAWLKVK
LTRTQDVVVGGIRPGKGGRRGSIGSLLVGVHDERGLHYAGRVGTGFSERALAQLASTLEP
LRTERCPFADVPAADASDAHWVQPVVVGEVEFAEWTPGGILRHARWRGVRADVPSDEVVR
ED
NT seq 2529 nt   +upstreamnt  +downstreamnt
gtggcgggcgagcagatcgtgcagatcggcggccgccgcctgcgtgtgacgaacctcgag
aaggtgctgtaccccgagacggggacgaccaaggccgaggtcatcgactactactcgcgc
atcgccgggtggatgatcccgcacctggccgggcgcccggtcacgcggaagcgctggccc
gacggcgtgggcacggcggcggagccgctcgaggccttcttcgccaaggacctcgagccc
ggcgcccccgactggctgccccggcagagcatcgcgcactcgggcggaccgaaggactac
ccgctggtgacggatgtcgcggcgctcgtctatctcgcgcaggtggcgagcctcgagctc
cacgttccgcagtggcgcttccgtgcggacggcgagcgggccaatcccgacaggctcgtg
ctggacctcgaccccggccccggcgtcgggctcgcggagtgcgcggaggtggcgcgggtg
tgccgcgacatcctcgcggggatgggcatggcggcgcatcccgtcacgagcggcagcaag
ggcatccacctctacgcggcccttcccggcgagcagacgagcgaccagatcacggcgttc
gcgaaggagctcgcccgcgcggtcgaggcggatcatcccgacctcgtcgtgagcgccatg
agcaaggccctccggcccggccgggtcttcatcgactggagccagaacaacggctccaag
acgaccatcgcgccgtactcgctgcggggacggccggagccgaccgtggcggcgccgcgc
acgtgggcggagctggaggatgcggggctgcgccacctgctcttctccgaggtgctcgag
cgcgccgaggccgacggcgatccgctcgcggcgctcggtgcacccggcctcggcaccggt
ggccccctcgccgcctacatcgccaagcgcgacgccggccgcacccccgagcccgtgccc
gcggagccgacgggccggcccgcccggccggaggagcggccccgcttcgtcatccaggag
caccacgcgtcgcgcctgcactgggacctgcgcctcgagcgggacggcgtgctcgccagc
tgggccgtcccgcggggcgtgccccccacgagcgcccgcaacaacctcgcggtgcagacc
gaggaccacccgatggagtacgcctcgttctccggcgtcatccccgcggggcagtacggc
gcgggcacgatgacgatctgggacgagggccggtacgacctcgagaagtggcgcgacgac
gaggtgatcgccacgctcgaggggcgccccggtggcccgctcggcaccgtgcgcctcgcc
ctcatccgcaccgacggcgccggcgagaagtcgacgtggctgctgcaccgcatgaagacg
gatgccgcgggccgcgcccagcccgacggcgctcccgtcgaacccgccgaccatgcggga
ctcggtgcgactgccgagccgtccgtcccgggacccgagccgccgtccgctccggatccc
gagtcgccgcccgctcctaccgccggcccgcctccgccggacgccggccgccatacgccg
atgctcgcgacatccgcgactcccggcatcgcgagggccaccgcgaggcgcaccgccgag
gccgccggcacggcgccctgggtggagttcaagtgggacggcatccgcgcgatcggcgtg
tggaacgggtcgtcgctgcgcctgctgacgcgcacgggcaccgacgtcaccgcgcgctat
ccggaggtgacggccgcggcacccgccgtgttcggatcggtgccgctcgtcgtcgacggc
gagctcgtggccctggacgagaccggtcgcccgagcttccccctcctgcagaaccgcatg
aacctcgcgcgagacgccgacatcgcacgcgagacgtcccgaacccccgtcacctactac
ctcttcgacgtcatcgagcgggacggcgccgacaccgcggcgcttcctcttcaccgtcga
cgcgaactgctcgagggatcgctcagccccggcgagacggtgcgcatcccgccggtcgtg
gacgacgtcgatgccgctctggacacggcgcgcgaattcgcgctcgaggggatcgtggtc
aaggatcccgccgcgccgtatcgccgcggcatccgcaccgaggcctggctgaaggtcaag
ctgacccgcacgcaggacgtcgtcgtcggcggcatccgtccggggaagggcgggcggcgc
ggctcgatcggctccctgctggtcggcgtgcacgacgagcgcgggctgcactacgccggg
cgggtcggcaccgggttctcggagcgcgctctcgcgcagctggcgagcacgctcgagccg
ctgcgcaccgaacggtgtcccttcgccgacgtgcccgccgccgacgcctccgatgcgcac
tgggtgcagccggtcgtcgtcggcgaggtggagttcgccgagtggacaccgggcggcatc
ctgcgccacgcccggtggaggggcgtgcgcgccgacgtcccctccgacgaggtcgtgcgc
gaggactga

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