Microbacterium limosum: RYJ27_09160
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Entry
RYJ27_09160 CDS
T09965
Name
(GenBank) DNA-formamidopyrimidine glycosylase family protein
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
mliy
Microbacterium limosum
Pathway
mliy03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
mliy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
RYJ27_09160
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mliy03400
]
RYJ27_09160
Enzymes [BR:
mliy01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
RYJ27_09160
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
RYJ27_09160
DNA repair and recombination proteins [BR:
mliy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
RYJ27_09160
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
H2TH
Fapy_DNA_glyco
zf-FPG_IleRS
Zn_ribbon_TFIIB
TniQ
DUF7573
Ribosomal_S13
DUF7577
DZR
NFACT_N
Zn_ribbon_8
Zn_Ribbon_Prim
Motif
Other DBs
NCBI-ProteinID:
WOQ68877
UniProt:
A0AAU0MFS8
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Position
1903722..1904597
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AA seq
291 aa
AA seq
DB search
MPEMPEVQGLVDFLRERVVGLRVTTATVLQFAALKTFDPPIRALEGAEISGVTRAGKFIA
IGCRGLGDDALHLVFHLAKAGWLRWHDSAPATPVRPGKSPLAARVVLSDGSGFDLTEAGT
KKSLAISVVRSLGDVPGIARLGPDPLDPAFTRDVFAALLSGRRTQIKGVLRDQSIVAGIG
NAYSDEILHAARMSPYALAANLDDGEVDRLYGATQQTLREAVATATGRPPADLKDAKRRG
MQVHARRGQPCPVCGTEVQSVFFADNSLEYCPTCQTGGKKLADRRLSRLLK
NT seq
876 nt
NT seq
+upstream
nt +downstream
nt
atgcccgagatgccggaagtgcagggcctcgtggacttcctccgcgagcgcgtcgtcggc
ctgcgcgtcacgaccgcgacggtgctgcagttcgccgcgctgaagacgttcgatcccccg
atccgggcgctggagggcgcggagatctccggcgtcacccgagccggcaagttcatcgcg
atcggatgccgcggcctgggcgatgacgccctgcacctcgtcttccacctcgccaaggcg
ggctggctgcgctggcacgacagcgcgcccgcgaccccggtacgcccgggcaagtcgccg
ctcgccgcccgcgtcgtcctctcggacgggtcggggttcgatctgaccgaggcgggcacg
aagaagtcgctcgcgatctccgtcgtccgctcgctgggggacgttccgggcatcgcccgc
ctggggcccgatcccctcgaccccgccttcacacgcgatgtcttcgccgccctcctctcc
ggccggcgcacgcagatcaagggagtgctgcgcgatcagtcgatcgtcgcggggatcggc
aacgcctactccgacgagatcctgcacgccgcccggatgtcgccgtacgccctcgccgcg
aatctcgacgacggcgaggtcgaccggctctacggggcgacgcagcagaccctccgcgag
gccgtcgcgaccgccaccggacgtccgccggccgacctcaaggacgccaagcggcgcggg
atgcaggtgcatgcgcgacgcgggcagccgtgccccgtgtgcggcaccgaggtgcagtcc
gttttcttcgcagacaactcgctcgagtactgccccacgtgtcagaccggcggcaagaag
ctcgccgatcgccggctctcccgcctgctgaagtga
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