Microbacterium limosum: RYJ27_09555
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Entry
RYJ27_09555 CDS
T09965
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
mliy
Microbacterium limosum
Pathway
mliy03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mliy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
RYJ27_09555 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mliy03400
]
RYJ27_09555 (mfd)
Enzymes [BR:
mliy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
RYJ27_09555 (mfd)
DNA repair and recombination proteins [BR:
mliy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
RYJ27_09555 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
Helicase_C
TRCF
CarD_TRCF_RID
ResIII
Cas3-like_C_2
MFD_D3
RecG_dom3_C
SNF2-rel_dom
Motif
Other DBs
NCBI-ProteinID:
WOQ68948
UniProt:
A0AAU0MES3
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All DBs
Position
complement(1982564..1986169)
Genome browser
AA seq
1201 aa
AA seq
DB search
MTIHGITRALARSEAFREGLSAASVDTDFSLVEGLVAPAIAALLERRAAAGEPPAVLVIA
PTGRRAEQVGPALSAYLPEARVLSFPAWETLPHERLSPSAETIGARLEALREIGAWDGST
PLVVTASVRAAIQPLAPGLDAVEPVDLRRGGRGYDLPRIAERLVELAYARVDMVSRRGEF
AVRGGILDVFPPVADHPYRIEFFGDEVEEVRAFSVADQRSLPGEVDAVRLGPSRELLLTP
DIRERAGALRDGLPGLAGMLEKMSEGIPADGMESLLPALVDRLVPLIDYLPAGAAVALVD
PERAVTRALTLQETNREFLEAAWSAAVAGAAVPVDLGSGDFLPLASLRESARERGGVWWS
FSAFDSGAADAAAEGVLDAEGGVATRIPAAPVPSFHGNVEGATEHVGELLRDGWSVVVAA
SGHGLVERARDVLSERGLAARVAETIDEIPEAGVALLTQASVEAGFEASDARIALLTEAD
FYGRTIGGDSRVVKKLASRRKNVVDPLQLKAGDFVVHTTHGIGRFVELVQREVSSGGRNP
VKSMREYLVVEYAPTKRGYPGDKLFVPTDQLDQLSRYVGGEAPALSKMGGSDWAQAKGKA
RKAVRDIAVELVKLYSARMSAKGYAFGPDTPWQRELEEAFPFAETPDQLQTIDEIKADME
RPIPMDRLLSGDVGFGKTEVAVRAAFKAIQDGKQVAMLVPTTLLVKQHSETFTERFAGFP
VKVRALSRFQTDKETREIVKGLADGTIDMVIGTHRILTEQVVFKDLGLMIIDEEQRFGVE
HKDALKKLKTNVDVLAMSATPIPRTLEMAVTGIREMSTLATPPEDRHPILSYVGPRNDKQ
VAAAIRRELLREGQVFYVHNRVKSIQRVAAHLAELVPEARIAVAHGQMGEHALEQVVDDF
WERKFDVLVSTTIIETGLDIANANTIIIDRADKYGLSQLHQLRGRVGRARERAYAYFLYD
ENKPLSETAADRLETISVNNDLGSGMQVALKDLELRGAGNMLGAEQAGHIAGVGFDLYLR
MIGEAVATFRGEEAEGPAELRLELPVQARIPESYIDSERLRLEAYQKLSAAAAANAAPDA
IDLVIDELRDRYGEPPAEVEGLVAVARLRRRAGRAGLTDVVAMGPNLRIAPARLPDSMRV
RLQRLYPAAKLLQGGDALVVPLPRDGGDPVGDEALLEWVAQLLTALFPEPDAAVGAPAAS
A
NT seq
3606 nt
NT seq
+upstream
nt +downstream
nt
gtgacaattcacgggatcacgcgcgccctcgcgcgctcggaggcgttccgtgaggggctc
tcggccgcatccgtcgacaccgacttctcgctcgtcgaggggctcgtcgcgcccgcgatc
gcggcgctgctggagcggcgggctgccgcgggcgagccgccggcggtgctggtcatcgct
cccaccgggcgccgcgccgagcaggtggggcccgcgctgtcggcctaccttcccgaggcg
cgggtgctctccttccccgcctgggagacgctgccgcacgagcgactcagccccagcgcc
gagacgatcggtgcgcggctcgaggccctgcgcgagatcggggcatgggacggatcgacg
ccgctcgtggtcaccgcctcggtccgcgccgcgatccagccgctcgcgcccggcctcgac
gccgtggaaccggtcgacctgcgccgcggcggccggggctacgatctgccgcgcatcgcc
gagcgcctggtcgagctcgcgtacgcgcgggtcgacatggtctcccggcgcggcgagttc
gccgtccgcggcggcatcctcgacgtcttccctcccgtggccgaccatccgtaccgcatc
gagttcttcggcgacgaggtcgaggaggtgcgcgcgttctcggtcgcggatcagcgctcg
cttcccggcgaggtcgacgccgtgcgcctcggcccgagccgcgagctgctgctgaccccc
gacatccgcgaacgggcgggggccctccgggacgggctgccgggcctggcgggaatgctg
gagaagatgtccgagggcattcccgccgacggcatggagtccctgctgccggcgctcgtg
gaccggctggtgccgctcatcgactacctgcccgccggggcggccgtcgcgctcgtcgac
ccggagagggccgtcacccgcgccctcaccctgcaggagaccaaccgcgagttcctcgag
gccgcgtggagcgccgccgtcgcgggagccgccgtgccggtcgacctcgggtcgggcgac
ttcctcccgctggcgagcctgcgggagtcggcccgcgagcggggcggcgtgtggtggagc
ttcagcgcgttcgactccggagccgccgatgcggccgccgagggagtgctggatgccgag
ggcggcgtcgccacgcgcatccccgccgcaccggtgccgtccttccacggcaacgtcgag
ggggcgaccgaacacgtcggcgaactcctccgtgacggctggagcgtcgtcgtcgcggcg
agcggccacggcctggtcgagcgggcgcgcgatgtgctctccgagcggggcctggcggcg
cgcgtcgccgagacgatcgacgagatccccgaagcaggtgtggcgctgttgacgcaggcg
agcgtcgaggcgggcttcgaggcatccgatgcgcgcatcgcactgctgaccgaagccgat
ttctacggccgcacgatcggcggcgacagccgcgtcgtgaaaaagctcgcgtctcgtcgc
aagaacgtcgtcgacccgctgcagctgaaggccggcgacttcgtcgtgcataccacccac
ggcatcggccgcttcgtcgagctcgtgcagcgggaggtgtcctcgggcggccgcaacccc
gtcaagagcatgcgcgagtacctcgtggtggagtacgcccccaccaagcgcggctacccg
ggagacaagctgttcgtacccaccgatcagctcgaccagctctcccggtacgtcgggggg
gaggccccggcgctgtcgaagatgggcggaagcgactgggcgcaggccaagggcaaggcg
cgcaaggccgtccgcgacatcgccgtggagctcgtgaagctctactcggcgcggatgtcg
gccaagggctacgcgttcgggcccgacacgccgtggcagcgggagctggaggaggcgttc
ccgttcgccgagaccccggaccagctgcagacgatcgatgagatcaaggccgacatggag
cgcccgatcccgatggaccggctgctgtcgggcgacgtcggcttcggcaagaccgaggtc
gccgtgcgggcggccttcaaggcgatccaggacggcaagcaggtcgcgatgctcgtgccg
acgaccctcctggtcaagcagcactccgagaccttcaccgagcgcttcgcgggcttccct
gtgaaggtgcgggccctctcgcggttccagaccgacaaggagacgcgcgagatcgtgaag
gggctcgccgacggcacgatcgacatggtcatcggcacccaccgcatcctcaccgagcag
gtggtcttcaaggatctgggcctcatgatcatcgacgaggagcagcgcttcggcgtcgag
cacaaggacgcgctgaagaagctcaagaccaacgtcgacgtcctcgcgatgagcgcgacc
cccattccgcgcacgctcgagatggccgtcacggggatccgcgagatgtcgaccctcgcg
acgccgccggaggaccggcatccgatcctgtcctacgtcgggccccgcaacgacaagcag
gtcgccgcggccatccgccgcgagctcctgcgcgaggggcaggtcttctacgtccacaac
cgggtgaagtcgatccagcgggtcgcggcgcacctcgccgagctcgtgccggaggcgcgc
atcgcggtcgcgcacggccagatgggcgagcacgcgctcgagcaggtcgtcgacgacttc
tgggagcgcaagttcgacgtactcgtctcgacgacgatcatcgagacggggctcgacatc
gcgaacgcgaacacgatcatcatcgatcgcgccgacaagtacggactctcgcagctgcac
cagctgcggggacgcgtgggtcgcgcgcgggagcgggcatacgcctacttcctctacgac
gagaacaagcctctgtcggagacggcggccgaccggctcgagacgatctcggtcaacaac
gacctcggctcgggcatgcaggtcgcgctcaaggacctcgagctgcgcggcgcgggcaac
atgctcggcgccgagcaggccggccacatcgcgggggtcgggttcgacctgtatctgcgg
atgatcggggaggccgtcgcgaccttccgcggcgaagaggccgagggacctgccgaactg
cgcctcgagctgcccgtgcaggcgcgcatccccgagtcgtacatcgacagcgagcggctg
cgcctcgaggcgtaccagaagctctcggcggcggccgccgcgaacgcggctccggacgcg
atcgatctcgtcatcgacgagctgcgcgaccgctacggggagccccccgccgaggtcgag
ggcctcgtcgcggtcgcccgtctgcgtcgtcgcgcgggtcgcgcgggactcaccgacgtc
gtggcgatgggacccaatctgcgaatcgctccggcgcgcctgccggattcgatgcgcgtg
cgcctgcagcggctgtaccccgccgcgaagctgctgcagggcggcgacgcgctcgtcgtg
ccgcttccccgcgacggcggcgaccccgtcggcgacgaagcgctcctggaatgggtcgcc
cagttgctgacggcgctgttccccgagcccgacgcggccgtgggcgcgcccgcggcatcc
gcctga
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