Microbacterium limosum: RYJ27_11610
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Entry
RYJ27_11610 CDS
T09965
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
mliy
Microbacterium limosum
Pathway
mliy03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
mliy00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
RYJ27_11610
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mliy03021
]
RYJ27_11610
03400 DNA repair and recombination proteins [BR:
mliy03400
]
RYJ27_11610
Enzymes [BR:
mliy01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
RYJ27_11610
Transcription machinery [BR:
mliy03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
RYJ27_11610
DNA repair and recombination proteins [BR:
mliy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
RYJ27_11610
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
WOQ69331
UniProt:
A0AAU0MGE6
LinkDB
All DBs
Position
complement(2401757..2405629)
Genome browser
AA seq
1290 aa
AA seq
DB search
MLDATTFDELRIGLATADDIRRWSYGEVKKPETINYRTLKPEKDGLFGEQIFGPSRDWEC
SCGKYKRVRFKGIVCERCGVEVTKSSVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDM
APKDLEKVIYFAAYMVISVDEDARHADMPQLENELRLELKTLGDQRDSRIAARLRTLEEE
LASLEAEGAKADQKKKVKDAAEKEMAQTRKGFDEQIARLERVWEDFRGLKVGDLKPEDDV
FQELQDRFSLYFEAHMGAEAIQKRLQDFDLAAEAEALHLQIAEGRGQRKIRAIKRLKVVN
SFLSTGMSPAAMVLDVVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLRRLIDL
GAPEIIVNNEKRMLQEAVDALFDNGRRGRPVTGTGNRALKSLSDMLKGKQGRFRQNLLGK
RVDYSGRSVIVVGPQLQLHQCGLPKQMALELFKPFVIKRLIDLGHSQNIKAAKRAVERTR
PEVWDVLEEIIRERPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCAAFNADFDGDQ
MAVHLPLSVEAQAEARLLMLASNNILKPSDGRPVTLPSQDMIIGLHHLTTIKEGAAGEGR
VFGSVSEAIMAREEGTLDLQAKARIRIQGLSFLEGEAPEDYDRHGLVEASLGQAIFNDAL
PKGYPFVREQADKGKLSQIVNKLAEEYPGEVAATLDRIKDAGFYWATRSGVTVALSDILT
PPNKAEIVSKYEAAAAKVQDDFEMGFIDDGARRKELIDIWTKATDEVQVAMRENFPVDNT
INRMVSSGARGNWLQIRNIAGMRGLVNNPKGEIIPRPIISSYREGLSVAEYFIATHGTRK
GLADTALRTADSGYLTRRLVDVSQDVIIRETDCGTGKGLEYVIAAEGADGELIKDKNVEN
SVFARTLAADVVDAKGEVLADAGSDVGDVLIDRLVGAGVTSIKVRSVLTCDSAVGVCAKC
YGRSLATGKLVDIGEAVGIIAAQSIGEPGTQLTMRTFHTGGSASADDITQGLPRVQELFE
ARTPKGASPIAEVAGRVTIDETEKTRKVIITPDDGDEPKVYPVLKRATLLVEDGQHVEVG
DPVQVGTLDPKDIMRVQGAREVQKFLVGGVQGVYRSQGVPIHDKHIEVIVRQMLRKVTVV
DHGDTTLLPGELVDSRRFIDINRQAVAEGKRPASGRPELMGITKASLATESWLSAASFQE
TTRVLTQAAMEGRSDPLVGLKENVIIGKLIPAGTGLAKYRNVVVEATEEAKSERYPNRVF
ASDGVYSEADLGFVDFDSFSTDDFTPGTYN
NT seq
3873 nt
NT seq
+upstream
nt +downstream
nt
gtgctcgacgcaacaacattcgatgagcttcgcatcggcctggccaccgccgacgacatc
cgtcgttggtcttacggcgaggtcaagaagcccgagaccatcaactaccgcacgctcaag
cccgaaaaggacggcctcttcggcgagcagatcttcggacccagccgtgactgggagtgc
tcgtgcggcaagtacaagcgcgtgcgcttcaagggcatcgtctgcgagcgctgcggcgtg
gaggtcaccaagtcctccgtccgccgcgagcgcatgggccacatcgagctcgccgcgccc
gttacccacatctggtacttcaagggcgtgccctcgcgcctcgggtacctgctcgacatg
gctccgaaggacctcgagaaggtcatctacttcgcggcgtacatggtcatctcggtcgac
gaggatgctcgtcacgccgacatgccccagctggagaacgagctgcgtctcgagctgaag
acgctcggcgaccagcgcgactcgcgcatcgccgcccgcctccgcacgctggaggaggag
ctcgcctcgctcgaggcagagggcgccaaggccgaccagaagaagaaggtcaaggacgcc
gccgagaaggagatggcgcagacccgcaagggcttcgacgagcagatcgctcgcctggag
cgcgtgtgggaggacttccggggcctcaaggtcggcgacctcaagcccgaggacgacgtc
ttccaggagctgcaggaccgcttcagcctctacttcgaggcgcacatgggcgccgaggcg
atccagaagcgcctgcaggacttcgacctggccgccgaggccgaggcgctgcacctgcag
atcgccgagggccgcgggcagcgcaagatccgtgcgatcaagcgcctcaaggtcgtcaac
tcgttcctctcgacgggcatgagccccgccgcgatggtgctcgacgtcgttccggtcatc
ccgcccgagctgcgcccgatggtccagctcgacggcggccggttcgccacgagcgacctg
aacgacctgtaccgccgcgtgatcaaccgcaacaaccgcctccgtcgcctgatcgacctc
ggtgctcccgagatcatcgtcaacaacgagaagcggatgctgcaggaggccgtcgacgcg
ctgttcgacaacggccgccgcggccgccccgtgacgggcaccggaaaccgcgcgctgaag
tcgctctccgacatgctcaagggcaagcagggacggttccgccagaacctgctcggcaag
cgcgtcgactactcgggccgttcggtcatcgtcgtcggtccgcagctgcagctgcaccag
tgcggtctgcccaagcagatggcgctcgagctgttcaagccgttcgtgatcaagcgcctc
atcgacctcggtcactcgcagaacatcaaggccgccaagcgcgccgtcgagcgcacgcgt
cccgaggtctgggacgtgctcgaggagatcatccgcgagcgccccgtgctgcttaaccgt
gcacccaccctgcaccgcctgggcattcaggcgttcgagccgcagctcgtcgagggcaag
gccatccagctccacccgctggtctgcgccgccttcaacgcggacttcgacggcgaccag
atggctgtgcaccttccgctgtcggtcgaggctcaggccgaggcccgcctgctcatgctg
gcgtcgaacaacatcctgaagccgtcggacggccgcccggtgaccctgccctcgcaggac
atgatcatcggtctgcaccacctcacgacgatcaaggagggcgccgcgggcgagggtcgt
gtgttcggctcggtctccgaggcgatcatggctcgcgaggagggcaccctcgacctgcag
gccaaggcgcgcatccgcatccaggggctgtcgttcctcgagggcgaggcccccgaggac
tacgaccgccacggtctcgtcgaggcatccctcggtcaggcgatcttcaacgacgcgctg
cccaagggttaccccttcgtgcgggagcaggccgacaagggcaagctgtcgcagatcgtc
aacaagctcgccgaggagtaccccggcgaggtcgcggccacgctcgaccgcatcaaggac
gccggcttctactgggccacccgttcgggtgtcaccgtggcgctgtccgacatcctgacg
cctccgaacaaggccgagatcgtctcgaagtacgaggccgccgccgcgaaggtccaggac
gacttcgagatgggcttcatcgacgacggtgcgcgccgcaaggagctcatcgacatctgg
accaaggccaccgacgaggtgcaggtcgcgatgcgcgagaacttcccggtcgacaacacc
atcaaccgcatggtgtcctcgggcgctcgtggcaactggctgcagatccggaacatcgcg
ggtatgcgaggcctggtgaacaaccccaagggcgagatcatcccgcgtccgatcatctcc
tcgtaccgcgaggggctgtcggtggcggagtacttcatcgccacgcacggtacccgcaag
ggtctcgccgacaccgccttgcgtaccgccgactcgggctacctgacccgtcgcctggtg
gacgtctcgcaggacgtcatcatccgcgagacggactgcggcaccggcaagggcctcgag
tacgtcatcgcggccgagggtgccgacggcgagctgatcaaggacaagaatgtcgagaac
tcggtgttcgcccgtaccctggcggccgacgtggtcgacgccaagggtgaggttctcgcg
gatgccggctccgacgtcggcgacgtgctgatcgaccgcctcgtgggcgccggagtgacc
tcgatcaaggtgcgctccgtgctcacctgcgactcggcggtcggcgtctgcgccaagtgc
tacggacgctcgctcgcgaccggaaagctcgtcgacatcggcgaggccgtcggcatcatc
gcggcccagtcgatcggtgagcccggcacgcagctgacgatgcgcaccttccacaccggt
ggctcggcctcggccgacgacatcacgcagggtctgccccgcgtgcaggagctcttcgag
gcccgtacccccaagggtgcgtcgcccatcgcagaggtcgccggtcgcgtcacgatcgac
gagacggagaagacccgcaaggtcatcatcactcccgacgacggcgacgagcccaaggtg
tacccggtcctcaagcgtgcgaccctcctcgtcgaggacggtcagcacgtcgaggtgggc
gacccggtgcaggtcggaacgctcgacccgaaggacatcatgcgcgtgcagggtgcccgc
gaggtgcagaagttcctcgtcggcggcgtgcagggcgtgtaccgctcgcagggtgtgccg
atccacgacaagcacatcgaggtcatcgtgcgccagatgctgcgcaaggtcacggtcgtc
gaccacggcgacacgaccctgctgcccggtgagctggtcgactcgcgtcgcttcatcgac
atcaaccgccaggcggtcgccgagggcaagcgccccgcgtccggtcgcccggagctgatg
ggcatcacgaaggcgtcgctcgcgaccgagtcgtggctgtcggccgcgtccttccaggag
acgacccgcgtgctcacgcaggccgccatggagggcaggagcgatccgctggtcggcctg
aaggagaacgtgatcatcggaaagctgatcccggccggtacgggtctggcgaagtatcgc
aacgtcgtggtcgaggccacggaggaggcgaagtcggagcggtaccccaaccgggtgttc
gcgtcggacggcgtgtactccgaggccgacctcgggttcgtcgatttcgacagcttctcg
acggacgacttcacgcccggcacctacaactga
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