Mycobacterium lacus: MLAC_25270
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Entry
MLAC_25270 CDS
T07377
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
mlj
Mycobacterium lacus
Pathway
mlj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mlj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MLAC_25270 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mlj03019
]
MLAC_25270 (rne)
03009 Ribosome biogenesis [BR:
mlj03009
]
MLAC_25270 (rne)
Enzymes [BR:
mlj01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
MLAC_25270 (rne)
Messenger RNA biogenesis [BR:
mlj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
MLAC_25270 (rne)
Ribosome biogenesis [BR:
mlj03009
]
Prokaryotic type
rRNA processing factors
MLAC_25270 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
S1
PCB_OB
Motif
Other DBs
NCBI-ProteinID:
BBX97233
UniProt:
A0A7I7NLS1
LinkDB
All DBs
Position
complement(2696269..2698992)
Genome browser
AA seq
907 aa
AA seq
DB search
MLDALTALDGRIRSAHSSVDRVDAVRVRDLLAAQAEPGASDLPAAPVAPGAPAAPEEPES
RLMLETLVERPHYMPLFVAPQPIEVDDGGDDDDDDADGDDAGEEGEVDRPANRRRRRGRR
GRGRGRGEQGGPDRPGPAGDDTNPPTDQRSEAESTKTEDVDGQEAEDTDETENGEEDNGP
AEVGSRRRRRRRRRKSGSGDDNEDGPAPDDPPNTVVHERAPRMAGKSGGSEDGGGSDPTE
IKGIDGSTRLEAKRQRRRDGRDAGRRRPPVLSEAEFLARREAVERVMVVRDRVRAEPPHP
GTRYTQIAVLEDGIVVEHFVTSAASASLVGNIYLGIVQNVLPSMEAAFVDIGRGRNGVLY
AGEVNWDAAGLGGADRKIEQALKPGDYVVVQVSKDPVGHKGARLTTQVSLAGRFLVYVPG
ASSTGISRKLPDTERQRLKDILREVVPADAGVIIRTASEGVKEDDIRADVSRLQERWSQI
ETKANEIKEKAAGAAVALYEEPDVLVKVIRDLFNEDFAGLVVSGDEAWTTINDYVNSVAP
DLVSKLTKYEPPTGEDGQAGPDVFAVHRIDEQLAKAMDRKVWLPSGGTLVIDRTEAMTVI
DVNTGKFTGSGGNLEQTVTKNNLEAAEEIVRQLRLRDIGGIVVIDFIDMVLESNRDLVLR
RLTEALARDRTRHQVSEVTSLGLVQLTRKRLGTGLIEAFSTSCPNCCGRGLLLHADPVES
PPANGRKSDSGGRRARRSKKNRSEESAEKGVVAKVPAHAPGEHPMFKAMAAGGSGLARRG
EDESGESAEEFTEEIQEQTEAEVPADLEDTDREDYEDTEEDEDELDDAEDLDDDEDLDVD
EDLDLDDDLDDSEDSDDEDSDSESEDVDSDVESPVSYGVAAGSASLLGRPRRRRAAGRPA
GPPIHAD
NT seq
2724 nt
NT seq
+upstream
nt +downstream
nt
gtgctggacgcgctgaccgcactcgatgggcggatccgcagcgcgcattccagcgtggat
cgcgtcgacgccgtgcgggtgcgcgatttgctggccgcgcaagcagagcccggcgcctcc
gacctcccagccgccccggtggcgccgggggcgccggccgcgcccgaagaacccgaatcg
cggttgatgctggagaccctcgtcgagcggccgcactacatgccgctgttcgtcgcgccg
caaccgatcgaggtcgacgacggcggcgacgacgacgatgatgacgccgacggtgacgac
gccggcgaagagggcgaggtcgaccgccccgccaatcggcggcggcggcgtggtcgtcgc
ggtcgtggccgcggccggggtgaacagggtggacccgaccgtcccggcccagccggtgac
gacacgaaccccccaaccgaccagcggtccgaagccgaatccaccaaaaccgaggatgtg
gacggccaagaggccgaagacaccgacgagaccgaaaacggcgaggaagacaacggaccg
gcggaggtcggcagccggcgccgccgccgccggcggcggcgcaagtccggctccggtgac
gacaacgaggacggaccggcacccgacgatccgcccaacaccgtcgtgcatgagcgggcg
ccccgcatggccggcaagtccggcggctcggaggatgggggcggctctgaccccactgag
atcaagggcatcgacggctcgactcggctggaggccaagcgccaacgtcgtcgggacggg
cgcgacgccggacggcgccgcccaccggtgttgagcgaggccgaattcctggctcgccgc
gaggccgtcgagcgagtaatggtggtgcgcgacagggtccgcgccgagccgccgcaccca
gggacgcggtacacccagatcgccgtgctcgaggacggcatcgtcgtcgagcattttgtg
acctccgccgcttctgcgtctttggtgggcaacatctacctcgggatcgtgcagaacgtg
ctgccctcgatggaggcggccttcgtcgacatcggccgcggccgcaacggcgtgctctac
gccggtgaagtcaattgggatgccgcgggattgggcggggccgaccgcaagatcgaacag
gccctcaaacccggcgactacgtcgtcgtgcaggtcagcaaggacccggtcggacacaag
ggcgcgcggctgaccacccaggtgtcactggccgggcgctttctggtttacgtgccgggt
gcgtcgtcgaccgggatcagtcgcaagctgcccgacaccgaacgccaacggctcaaggac
atcctgcgggaggtagtgccggccgatgcgggcgtcatcatccgcaccgcgtcggagggc
gtcaaagaggacgacatccgcgcggacgtcagccggctgcaggagcgttggagccagatc
gagaccaaggcaaacgagatcaaagagaaggccgccggcgccgcggtggcgctctacgaa
gagcccgacgtgctggtcaaagtcatccgggatttgttcaacgaggacttcgccggcctc
gtcgtctccggcgacgaggcgtggaccaccatcaacgactacgtgaattcggttgcgccc
gatctcgtttcgaagctgacgaagtatgaaccccccaccggggaggacgggcaggccggg
cccgacgtgttcgcggtgcatcgcatcgacgagcagctggccaaagcgatggaccgcaag
gtgtggctgccctcgggcggcacactggtgatcgaccgcaccgaggcgatgacggtgatc
gacgtcaacaccggcaagttcaccgggtccgggggcaacctggagcagacggtcaccaag
aacaacctggaggccgccgaggagatcgtgcgccagctgcgcctgcgtgacatcggcggc
atcgtggtcatcgacttcatcgacatggtgctggaatccaaccgcgacctagtgctgcgc
cggctgaccgaggcgctggcccgtgaccgcacccgtcaccaggtgtccgaggtgacttcg
ctcggcctggtccagctgacccgcaagcggctgggaaccgggctgatcgaggcgttctcg
acatcgtgtcccaactgttgtggtcgcgggctcctgctgcacgccgacccggtcgagtcg
ccgccagccaacgggcgcaagtccgactctggtggtcggcgggccaggcggtcgaagaag
aaccgatccgaagagtcggctgagaaaggcgtcgtggccaaggtgcccgcccacgcgccc
ggtgagcatccgatgttcaaggcgatggcggcgggtgggtccgggctggctcgtcgcggt
gaggacgaatccggcgagtccgctgaggaattcaccgaagagattcaagagcagaccgaa
gccgaggttcccgcagacctggaggacaccgaccgggaagactacgaggacaccgaagag
gacgaggacgagctcgacgacgcggaggacctcgatgacgatgaggaccttgacgtcgat
gaggacctcgacctagacgacgacctcgacgactcggaagactccgacgacgaagactcc
gattcggagtccgaagacgtcgactccgacgtcgagagccccgtcagttacggtgttgca
gccggctccgcgtcactccttggacgtccgcggcggcggcgcgccgccggccggccggcc
ggcccaccgatccatgcggactga
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