Mustela lutreola (European mink): 131817436
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Entry
131817436 CDS
T09578
Symbol
DHX38
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16
KO
K12815
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16 [EC:
5.6.2.6
]
Organism
mlk
Mustela lutreola (European mink)
Pathway
mlk03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mlk00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
131817436 (DHX38)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
mlk03041
]
131817436 (DHX38)
Enzymes [BR:
mlk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
131817436 (DHX38)
Spliceosome [BR:
mlk03041
]
Complex C
Other components
Step II factors
131817436 (DHX38)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
DEAD
HA2_N
AAA_22
AAA_19
T2SSE
nSTAND3
PhoH
Flavi_DEAD
AAA_30
Microtub_bd
AAA_16
AAA_7
Motif
Other DBs
NCBI-GeneID:
131817436
NCBI-ProteinID:
XP_059006743
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All DBs
Position
16:13979440..13997951
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AA seq
1226 aa
AA seq
DB search
MEDTSEDASIHRLEGTDMDSQVGGLICKTKSAASEQHVFKAPAPRPSLLGLDLLASLKRR
EREEKDDGEDKKKSRISSYKDWEESKDDQRDAEEEGSDQAGRHSRKDRHYRSARVETPSH
PGGVSEEFWERSRQRERERREHGVYASSREEKDRKRDRSRDRDCDRKRDRDERDRSRHSS
RSERDGGSERSRRNEPESPRHRPKDAATPSRSAWEEEDSGYGFSRRSQWESPSPAPSYRD
SERSHRQSSRDRDRSVRSRYSDDTPLPTPSYKYNEWADDRRHLGSTPRLSRGRGRREDGE
EGISFDTEEERQQWEDDQRQADRDWYMMDEGYDEFHNPLAYSSEDYVRRREQHLHKQKQK
RISAQRRQINEDNERWETNRMLTSGVVHRLEVDEDFEEDSAAKVHLMVHNLVPPFLDGRI
VFTKQPEPVIPVKDATSDLAIIARKGSQTVRKHREQKERKKAQHKHWELAGTKLGDIMGV
KKEEEPDKALTEDGKVDYRTEQKFADHMKKKSEASSEFAKKKSILEQRQYLPIFAVQQEL
LTIIRDNSIVIVVGETGSGKTTQLTQYLHEDGYTDYGMIGCTQPRRVAAMSVAKRVSEEM
GGNLGEEVGYAIRFEDCTSENTLIKYMTDGILLRESLREADLDHYSAIIMDEAHERSLNT
DVLFGLLREVVARRSDLKLIVTSATMDAEKFAAFFGNVPIFHIPGRTFPVDILFSKTPQE
DYVEAAVKQSLQVHLSGAPGDILIFMPGQEDIEVTSDQIVEHLEELENAPALAVLPIYSQ
LPSDLQAKIFQKAPDGVRKCIVATNIAETSLTVDGIMFVIDSGYCKLKVFNPRIGMDALQ
IYPISQANANQRSGRAGRTGPGQCFRLYTQSAYKNELLTTTVPEIQRTNLANVVLLLKSL
GVQDLLQFHFMDPPPEDNMLNSMYQLWILGALDNTGGLTSTGRLMVEFPLDPALSKMLIV
SCDMGCSSEILLIVSMLSVPAIFYRPKGREEESDQIREKFAVPESDHLTYLNVYLQWKNN
NYSTIWCNDHFIHAKAMRKVREVRAQLKDIMVQQRMSLASCGTDWDIVRKCICAAYFHQA
AKLKGIGEYVNIRTGMPCHLHPTSSLFGMGYTPDYIVYHELVMTTKEYMQCVTAVDGEWL
AELGPMFYSVKQAGKSRQENRRRAKEEASAMEEEMALAEEQLRARRQEQEKRSPLGSVRS
TKIYTPGRKEQGEPMTPRRTPARFGL
NT seq
3681 nt
NT seq
+upstream
nt +downstream
nt
atggaggataccagcgaggatgcctcgattcatcgattggaaggcactgatatggactct
caggttggcggtcttatttgcaagaccaaaagtgcagccagtgagcagcatgttttcaag
gcccccgccccccgcccttcattgctgggactggacttgttagcttccctgaaacgaagg
gagcgcgaggagaaggatgatggggaggacaagaagaagtccagaatctcttcctacaag
gactgggaggagagcaaggatgaccagcgggatgctgaggaggagggcagtgaccaagct
ggccgacacagccggaaagacagacattatcggtctgctcgggtggagactccatcccac
cctggcggtgtgagcgaggagttttgggaacgcagtcggcagagagagcgggagcggcgg
gagcatggtgtctacgcctcatccagagaagaaaaggatcggaagagagacagatcacgg
gatcgagactgtgaccgcaagagagacagagatgagcgggatagaagcagacacagcagc
agatccgagcgagatggagggtcagagcgcagcagaagaaatgaaccggagagcccgaga
caccgacctaaagatgcagctactccttcaaggtccgcctgggaggaagaggacagtggc
tacggcttctcaaggcgctcgcagtgggagtccccgtctccggcgccttcttaccgggat
tctgagcggagccatcggcagtccagtcgtgatcgggataggtctgtgcggagcaggtat
tcagacgacacacctctgccaaccccatcctacaaatacaatgagtgggccgatgacaga
agacacctgggctccacgccccgtctgtccaggggccgaggaagacgcgaggatggtgaa
gagggaatttcgttcgacacagaagaggaacggcagcagtgggaggatgaccagaggcaa
gcggaccgggattggtacatgatggatgaggggtacgacgagttccacaaccccctggcc
tactcctccgaggattacgtgagaaggcgggagcagcacctgcataaacagaagcagaag
cgcatttcggctcagcggaggcagatcaacgaggataacgagcgctgggagaccaaccgc
atgctcaccagcggggtggtccatcggctggaggtggacgaggacttcgaggaggacagt
gcggccaaagtgcacttgatggtgcacaacctggttcctccctttcttgatgggcgcatc
gtcttcaccaagcagccagagcccgtgattccagtcaaggatgccacttctgacttggcc
attattgctcgaaaaggcagtcaaacagtgcggaagcacagggaacagaaggaacggaaa
aaggctcaacacaaacactgggagctggctggaaccaagctaggagacatcatgggtgtc
aaaaaagaggaagagccagataaagctctgacagaagacggtaaagtggactataggacg
gagcagaagtttgcagaccacatgaagaaaaagagcgaagccagcagcgagtttgccaag
aagaagtccattctggagcagcgacagtatctgcccatcttcgctgtgcagcaggaactt
ctaactatcatcagagataacagcatcgtgatcgtggttggagaaacagggagcggtaag
accactcagctgacgcagtacttgcatgaagacggttacacggactacgggatgattggg
tgcacccagcctcgccgtgtggctgccatgtctgtggccaagagagtcagtgaagaaatg
gggggcaaccttggtgaggaggtgggttacgcgatccgcttcgaagactgcacgtcagaa
aacaccttgatcaaatacatgacggacgggatcctgctgcgggagtcgctccgggaagcg
gacctggatcactacagtgccatcatcatggacgaggcccacgagcgctccctcaacact
gacgtgctctttgggctgctccgggaggtggtggctcggcgctcagacctgaagctcatc
gtcacgtcagccactatggatgcagagaaatttgctgccttttttgggaatgttcccatc
ttccacatccctggccggactttccctgttgacattctcttcagcaagaccccgcaggag
gactacgtggaggccgcagtgaagcagtccttacaggtgcacctgtcaggggctcctggg
gacatccttatcttcatgcctggccaagaggacattgaggtaacctcagaccagattgtg
gaacatctggaggaactggaaaatgcacctgccttggctgtgctgcccatctactctcag
ctaccgtctgacctccaggctaaaatcttccagaaggctccagatggagttcggaagtgt
atcgttgccaccaacattgctgagacgtcgctgactgtcgatggcatcatgtttgttatt
gactctggttattgcaaattaaaggtcttcaaccccaggattggcatggatgctctacag
atctaccccatcagccaggccaatgccaaccagaggtcggggcgtgctggccggacgggc
ccaggtcagtgtttcaggctctacacccagagcgcctacaagaacgagctcctgaccacc
acggtgcctgagatccagaggaccaacctggccaacgtagtgctgctgctcaagtccctt
ggcgtgcaggacctgctgcagttccacttcatggacccgccgcctgaggacaacatgctc
aactccatgtatcagctctggatcctcggggccctggacaacactggtggtctgacctcg
acgggtcggctgatggtggagtttcccctggacccggcgctgtccaagatgctgattgtg
tcctgtgacatgggctgtagctcggagatcctgctcattgtgtccatgctctccgtgccg
gccatcttctacaggcccaagggccgagaggaggagagtgatcagatccgggagaagttt
gctgtccccgagagtgaccatttgacctacctgaatgtctacctgcagtggaagaataat
aattactccaccatctggtgtaacgatcattttatccatgccaaggccatgcggaaggtc
cgggaggtacgggctcagctcaaggacatcatggtgcagcagcggatgagcctggcctcg
tgtggcactgactgggacatcgtcaggaagtgtatctgtgcagcctatttccaccaggcg
gctaagctcaagggaattggggagtatgtgaatatccggacggggatgccctgccacctg
caccccaccagctctctctttggaatgggctataccccagactatatagtgtatcacgag
ctggtcatgaccaccaaggagtacatgcagtgtgtgactgccgtggatggagagtggctg
gcggagctgggccccatgttctacagcgtgaaacaggcgggaaagtctcggcaggagaac
cgccgacgggccaaagaggaggcctctgccatggaggaggagatggccctcgctgaggag
cagctgcgagcccggcggcaagagcaggagaagcgcagccccctgggcagtgtccggtct
acaaagatctacactccaggccggaaggaacaaggcgaacccatgacccctcgccgcaca
ccagcccgctttgggctctga
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