Mustela lutreola (European mink): 131825053
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Entry
131825053 CDS
T09578
Symbol
XRN1
Name
(RefSeq) 5'-3' exoribonuclease 1 isoform X1
KO
K12618
5'-3' exoribonuclease 1 [EC:3.1.13.-]
Organism
mlk
Mustela lutreola (European mink)
Pathway
mlk03008
Ribosome biogenesis in eukaryotes
mlk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mlk00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
131825053 (XRN1)
09123 Folding, sorting and degradation
03018 RNA degradation
131825053 (XRN1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mlk03019
]
131825053 (XRN1)
03009 Ribosome biogenesis [BR:
mlk03009
]
131825053 (XRN1)
03016 Transfer RNA biogenesis [BR:
mlk03016
]
131825053 (XRN1)
03036 Chromosome and associated proteins [BR:
mlk03036
]
131825053 (XRN1)
Messenger RNA biogenesis [BR:
mlk03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
131825053 (XRN1)
mRNA degradation factors
5'-3' decay
5' exonucleases
131825053 (XRN1)
Ribosome biogenesis [BR:
mlk03009
]
Eukaryotic type
Pre-60S particles
RNases
131825053 (XRN1)
Transfer RNA biogenesis [BR:
mlk03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
131825053 (XRN1)
Chromosome and associated proteins [BR:
mlk03036
]
Eukaryotic type
Gene silencing
piRNA pathway
131825053 (XRN1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_N
XRN_M
XRN1_D2_D3
XRN1_D1
SH3_12
Dicer_dimer
Motif
Other DBs
NCBI-GeneID:
131825053
NCBI-ProteinID:
XP_059019861
LinkDB
All DBs
Position
2:155980645..156084468
Genome browser
AA seq
1743 aa
AA seq
DB search
MGVPKFYRWISERYPCLSEVVKEHQIPEFDNLYLDMNGIIHQCSHPNDDDVHFRISDDKI
FTDIFHYLEVLFRIIKPRKVFFMAVDGVAPRAKMNQQRGRRFRSAKEAEDKIKKALEKGE
TLPTEARFDSNCITPGTEFMARLHEHLKYFVNMKISTDKSWQGVTIYFSGHETPGEGEHK
IMEFIRSEKAKPDHDPNTRHCLYGLDADLIMLGLTSHEAHFSLLREEVRFGGKKTQRVCA
PEETTFHLLHLSLMREYIDYEFSVLKDKISFKYDIERIIDDWILMGFLVGNDFIPHLPHL
HINHDALPLLYGTYITILPELGGYINESGHLNLPRFEKYLVKLSDFDREHFSEVFVDLKW
FESKVGNKYLNEAAGVAAEEAKIYKEKKKPKGQENAICWAALDKSGEVVTSKDNLEDETE
DDDLFETEFRQYKRTYYMTKMGVDVVSDDFLADQAACYVQAIQWILHYYYHGVQSWSWYY
PYHYAPFLSDIRNISTLKIHFELGKPFKPFEQLLAVLPAASKNLLPTCYQHLMTSEDSPI
IEYYPPDFKTDLNGKQQEWEAVVLIPFIDEKRLLEAMETCNHSLKKEERKRNQHSECLMC
WYDRDTEFTYPSPWPEKFPAIEHCCTRYKIISLDAWRIDISKNKITRVDQKALYFCGFPT
LKHIKHKFFLKKSGVQVFQQSSRGENMMLEILVNAESDELCVENIASSVLGKSVFVNWPH
LEEARVVGISDGETKFYLEEPPGTQKLYLERTAPPSKVVHLGDKEQSNWTKEVQGISEYY
LRRKGIIINETSAVVYAQLLTGRKYQINQNGEVRLEKQWSKQVLPFVYQTIVKDIRAFDS
RFSNIKTLDDLFPPRSTVFMLGTPYYGCTGEVQDSGDVITEGRIRVVFSIPCEPNLDALI
QNQHKYSIKYNPGYVLASRLGVSGYLVSRFTGSIFIGRGSRRNPHGDHKANVGLNLKFNK
KNEEVPGYTKKVGSEWMYSSAAEQLLAEYLERAPELFSYIAKNSQEDVFYEDDIWPGENE
NGAEKVQEIITWLKGHPVSTLSRSSCDLQILDAAIVEKIEEEVEKCKQRKNNKKVRVTVK
PHLLYRPLEQQHGVIPDRDAEFRLFDRVVNVREYFSVPVGLRGTIIGIKGANREADVLFE
VLFDEEFPGGLTIRCSPGRGYRLPTSALVNLTHGSRSETGNQKLTAIVKPQPAVNHYSSN
TSISSGHLGGLNHSPQSLFVPTQVPTKDDDEFCNIWQSLQGSGKVQHFQPTLQEKVTVLP
QEISQITQHPKSGFTDNSVKCQQRKHEAHRKFKEECKSPKTENRLQKMSNKQMFGGPAKC
NIKLLKRNESAEVSENQKVVTGYPNAIDKPNPRIENFLASLNISKEKEVQSSPHEEPPSE
ELLSPQSFAMKGTRMLKEILKIDGSDAADHKNETKQFGNEVNVSSNRRDEYGPSSQAKQN
KKLTSYMNKPYSTSEYHNVQSMDHVCWPAPSHIPPVSTPVTELSRICSLIGMPQPDFSFL
RTPQTMTVCQVKLSNGLLVHGPQCHSENEAKEKAALFALQQLGSLGVNFPLPPPIFPNYP
PAVPPGTIPPVFPQPTGWDHYGSNLALGAANIMPSSSHLFGSMPWGPPVPVPGKPFHHPS
YSGTMPVAGGMPGGVHNQFIPLQVTKKRVANKKNLESKEAQSSHATPLQTSQPGSSSVTK
VIPQESSSASLKSSQITQPASSFQVEAASQGHSMSHHKSTPSSSSRRKSRKLAVNFGVSK
PSE
NT seq
5232 nt
NT seq
+upstream
nt +downstream
nt
atgggagtccccaagttttaccgatggatctcggagcggtatccctgcctcagtgaagtg
gtgaaagagcatcagattcctgaatttgacaacttgtacctggatatgaatggaatcata
catcaatgttcccatcctaatgatgatgatgttcacttcagaatttctgatgataaaatc
tttactgatatttttcactacttggaggtgttgtttcgcattattaaacctaggaaagtg
ttctttatggctgttgatggtgtggctcctcgagcaaaaatgaaccagcagcgggggagg
cgttttaggtcagcaaaggaggcagaagacaaaattaaaaaggcattagaaaaaggagaa
actcttcctacagaggccagatttgattccaactgtattacaccagggactgaattcatg
gccaggttacatgaacatctgaagtattttgtaaatatgaaaatttctacagataagtcg
tggcaaggagttaccatctacttctcaggccatgagacccccggagaaggagagcataaa
atcatggaatttatcagatccgagaaagcaaagccagatcatgatcccaacaccagacat
tgtctttatggtttagatgctgacttgattatgcttggattaacaagtcatgaggcacat
ttctctcttttaagagaagaagttcggtttggtggcaaaaagacacaaagggtatgcgca
ccagaagaaaccacatttcacctcctacacttgtctttaatgagagagtatattgactat
gagttttcagtactgaaagacaagatctcttttaaatatgatattgaaaggataatagat
gattggattttgatgggatttcttgttgggaatgattttatccctcatctacctcattta
catattaatcatgatgcactgcctcttctttatggaacatatattaccatcctgccagaa
cttggtggttatattaatgaaagtgggcatctcaacttacctcgatttgagaaatacctt
gtgaaactatcagattttgatcgggaacacttcagtgaagtttttgtggacctaaagtgg
tttgaaagcaaagttggtaacaagtacctcaatgaagcagcaggtgttgcagcagaagaa
gccaagatctacaaggaaaagaaaaaaccaaagggccaggaaaacgccatttgttgggct
gctttagacaaaagtggagaagtggtaacttctaaggataatttagaagatgagactgaa
gatgatgacctatttgaaactgagtttagacaatataaaagaacatattacatgacgaag
atgggagttgatgtagtgtctgatgactttctggctgatcaagctgcatgttatgttcag
gcaatacagtggattttgcactattactatcatggagttcagtcctggagctggtattat
ccctaccattatgcacctttcctgtctgatatccgtaacatcagtacactcaaaatccat
tttgaactaggaaaaccttttaagccattcgaacagcttcttgctgtacttccagcagct
agcaaaaatttacttcctacatgctaccagcacttgatgaccagtgaagactcaccaatt
atagaatattatccacctgattttaaaactgacctaaatgggaaacaacaggaatgggaa
gctgtggtactaataccttttattgatgagaagcgattgttggaagccatggaaacatgt
aaccactccctcaaaaaggaagaaaggaaaagaaaccaacatagtgagtgcctaatgtgc
tggtatgatagagacacagagttcacctacccctcaccatggccagaaaagttccctgcc
atagaacattgttgcacaaggtataaaataatatcattagatgcttggcgtatagacata
agcaagaacaaaataaccagggttgaccagaaggcgttgtatttctgtggatttcctacc
ctgaaacacatcaaacacaaattttttttgaagaagagtggggttcaagtattccagcaa
agcagtcgtggagaaaacatgatgttagaaatcttagtgaatgcagaatcagatgaactt
tgtgtagaaaatatagcttcatccgtgcttggaaagtctgtctttgttaattggcctcat
cttgaagaagctagagttgttggtatatcagatggagaaactaaattttacttggaagaa
cctccaggaacacagaagctttatttggaaagaactgccccaccatctaaagtggtccat
cttggagacaaagagcaatctaactggacaaaagaagtacaaggaatttcagaatactac
ctaagaagaaaaggaataataataaatgaaacatccgcagttgtatatgctcagttactc
acaggtcgtaaatatcaaataaatcaaaatggtgaagtccgtctagagaaacaatggtcg
aaacaagttcttccttttgtttatcaaactattgtaaaggatatccgagcttttgactcc
cgtttctccaatatcaaaacattggatgacttgtttcctcccagaagtacggtctttatg
ctgggaaccccctattatggctgcactggagaagttcaggattcaggggatgtgattaca
gaaggtaggattcgtgtggttttcagcattccatgtgagcccaatcttgatgctttaata
caaaaccaacataaatattctataaagtacaacccaggatatgtgttggccagtcgcctt
ggagtgagtggataccttgtttcaaggtttacaggaagtatatttattggaagaggatct
aggagaaaccctcatggagaccataaagcaaatgtgggtttgaatctcaaattcaacaaa
aaaaatgaagaggtacctggctatactaagaaagttggaagtgagtggatgtattcatct
gcagcagaacaacttcttgcagagtacttagagagggctccagaactatttagttacata
gccaaaaatagccaggaggatgtattctatgaagatgacatttggcctggagaaaatgag
aatggtgctgagaaagttcaagaaattattacttggctaaagggacatcctgtcagtact
ttatctcgttcttcttgtgatttacaaattctggatgcagctattgttgagaaaattgag
gaagaagttgaaaagtgcaagcaaagaaagaataataagaaggtacgagtgacagtgaag
ccccatttgctgtacagacctttagaacagcaacatggagtcattcctgatcgagatgca
gaatttcgtctctttgaccgtgtggtaaatgtgagagagtacttttcagttccagttggc
cttcggggcaccatcataggaattaaaggggctaatagagaagctgatgtactatttgaa
gtattatttgatgaagaatttcctggaggcttaacaataaggtgctcgcctggtagaggt
tatcgactgccaacaagtgccttggtaaatcttactcatgggagtcgctctgaaactgga
aatcagaagttgacagccattgtgaaaccacaaccagctgtgaatcactatagctcaaat
acatcaatttcttctgggcatttgggaggcctgaaccattctccccaatcactttttgtt
cctactcaagtacctactaaagatgatgatgagttttgcaacatttggcagtccttacag
ggatctggaaaggttcaacattttcagccaactctacaagagaaggttacagttctacct
caagaaataagtcaaataactcaacatcctaagtcgggctttactgacaacagtgttaaa
tgtcagcaaagaaaacatgaggctcacaggaaatttaaagaagagtgtaaaagtcctaaa
actgagaatcggttacaaaaaatgtcaaataaacagatgtttggagggcctgccaaatgt
aatattaagctattgaagagaaatgaaagtgcagaagtctcagaaaaccaaaaggttgtg
actggttacccaaatgctattgataagccaaaccctagaattgagaactttttagcatcc
ttaaatatctccaaagaaaaagaagtacagtcatctcctcatgaagagcctccaagtgaa
gaacttttgtcaccacagtcatttgcaatgaagggaactcggatgcttaaagaaatacta
aaaattgatggctctgatgctgcggaccataaaaatgaaacgaagcagtttggtaatgaa
gtcaatgtttcctctaatagaagagatgaatatggaccttcctcccaggctaaacaaaat
aagaaattaacatcttacatgaataagccttacagtactagtgaataccataatgttcag
tctatggaccatgtgtgttggcctgctcccagccatatccctcctgtgtccacaccagta
actgaactttctcgaatttgttcgcttattggaatgccacaaccagatttctcctttctt
agaacaccacagacaatgacagtttgccaggtaaaattatctaatggcttactggtacat
gggccacagtgccattctgaaaatgaagccaaggaaaaagccgcactttttgctttacaa
caattgggctccttaggagtgaatttccctttgcctccaccaatatttccaaattatcct
cctgctgtaccacctggaaccattcctccagtttttcctcagcctactggctgggatcac
tatggaagcaacttagcattgggggcagctaatataatgccttcatcatctcacctcttt
ggctccatgccatggggaccaccagtgccagttcctgggaaaccatttcatcatccttca
tattctgggaccatgccagtggctgggggaatgccaggtggtgtgcacaatcagttcata
cctctacaggttactaaaaaaagggttgcaaataaaaagaacttggagagtaaggaggcc
cagagttctcacgctaccccacttcagactagccagccagggtcttccagtgtcaccaaa
gtgattccacaggagagttcatctgcttccttaaagtcctctcagattactcagcctgcg
tcttcttttcaagttgaagctgcctcccaaggccatagtatgtctcatcacaagtcaaca
ccaagctcttcttcaagaagaaaatcaagaaaactggccgtcaattttggcgtttctaaa
ccttctgaataa
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integrated database retrieval system
