Mustela lutreola (European mink): 131825478
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Entry
131825478 CDS
T09578
Symbol
COL18A1
Name
(RefSeq) collagen alpha-1(XVIII) chain isoform X1
KO
K06823
collagen type XVIII alpha
Organism
mlk
Mustela lutreola (European mink)
Pathway
mlk04974
Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:
mlk00001
]
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
131825478 (COL18A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
mlk04147
]
131825478 (COL18A1)
00535 Proteoglycans [BR:
mlk00535
]
131825478 (COL18A1)
00536 Glycosaminoglycan binding proteins [BR:
mlk00536
]
131825478 (COL18A1)
Exosome [BR:
mlk04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
131825478 (COL18A1)
Proteoglycans [BR:
mlk00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
131825478 (COL18A1)
Glycosaminoglycan binding proteins [BR:
mlk00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
131825478 (COL18A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Endostatin
Collagen
DUF959
Collagen_trimer
Fz
Laminin_G_3
Motif
Other DBs
NCBI-GeneID:
131825478
NCBI-ProteinID:
XP_059020926
LinkDB
All DBs
Position
2:224139073..224219445
Genome browser
AA seq
1727 aa
AA seq
DB search
MAPHPCGRPGPLLLLLLPPLLLTCRPAAAQANLLSLNWLWSTRTEGPPAELVSAPPRSPH
VQPGEDTTTHSAPQHGPSEQGTAPASPALPVERLETGQGRASTTPAASTAGPDTKEENLA
GVGAKILRVAQGIRSFVQLWDDTTTPAGSPATETPAPVTPTAPLTLAGPSSAPQENDTAL
WLGSMAPSSPDTPKMEAGTPPGPTQLPPSPGGPSLLPPSPGRASLSSALGGAPPWGSPSS
PGRPRDPDSGGLLPVAARPSQRHRPPDIHKRSPRLLALVAGPPGALTAPAALSSDPPTLA
AWIPLLTMDRGAWAPHGAGSVGPGLAGVSALLGAAPRTPTGQPVPGAAGRCLPLPPSLPV
CGRLGIGRSWLPNHLHHGSSEEVQAAARAWGGLLQTRCHRFLAWFFCLLLAPPCAAGPLP
APPPCRQFCEALEDACWSHLDGGGLPVPCASLPAREDGYCVFIGPGAETLGVEVGLLQLL
GEPPPQQVTQVDDPDVGPAFVFGPDANSGQAARYHFPSRFFRDFSLHFHVRPATEDAGVL
FAITDAAQAVVSVGVKLSGVRDGHQQIQLLYTEPGAARTHTAASFRLPAFTGQWTRFALS
VDGATAALFVDCELFQRVPLARSPRGLELEPGAGLFVAQAGGADPDKFQGAIAELRVRGD
PHVSSLHCLEEDDEDSGGASGDFGSGLEETREPVREPSGPSSNPSLPEAPPVTSPPLAAG
GNEEGSRTEEMEEETTVPALAARTLPTLDLVTAGSVWSLGGSLEEGPAARSPEPVPGPQC
PPGPPGPPGKDGIPGRDGEPGDPGEDGTPGDPGPQGFPGTPGDAGPKGEKGDPGVGPRGP
PGPQGPPGPPGPSFRHDKLTFIDMEGSGFGGDLESLRGPRGYPGPPGPPGVPGLPGEPGR
FGMNSSDVPGPAGLPGVPGRNGPPGLPGTPGPPGPPGRDGGPGKTGQKGSPGDAGAPGPK
GDKGDPGPAGAPGENGLAGAPGPAGPPGPPGPPGPPGPGLAAGFDDMEGSGAPFWSTAQG
ASGPQGPAGPPGVKGDPGVTGPPGAKGEVGADGPPGFPGLPGREGTAGAQGPKGEKGTQG
EKGEPGRDGVGQPGLPGPPGPPGPVVYLSEQDRVLAGVPGPEGRPGFAGFPGPAGPKGDV
GSKGQQGLPGPKGEKGEPGPVFSHDGSMLAPGQKGAKGEPGFRGPPGPYGRPGHKGEIGF
PGRPGRPGMNGLKGEKGEPGHASVGFGVRGPPGPPGPPGPPGPPGVPIYDSNAFTESGRP
GAPGLPGLQGPSGPKGDKGDVGPPGPPGQFPLDLLPLEAEMKGEKGDRGDPGPKGERGEP
GGGGFFGSSVPGPPGPPGYPGIPGPKGESIRGQPGPPGPQGPPGIGHEGRQGPPGPPGPP
GPPGPPSFPGPYRQTISVPGPPGPPGPPGPPGTMGTSSGVRIWATYQTMLDKVPEVPEGW
LIFVAEREELYVRVRGGLRKVLLEARTPLPRGTDNEVAALQPPAGNPYPRRELTHSTVRP
WRADDILASPPRLPDPQPYPGAPHHGSYRHFQPARPTGGPTHSHTHQDYQPVLHLVALNS
PQPGGLRGIRGADFQCFQQARAAGLPGTFRAFLSSRLQDLYSVVRRADRTGVPIVNLRDE
ELFPSWEALFSGSEGQLKPGARIFSFDGRDVLQHPAWPQKSVWHGSDPSGRRLTDSYCET
WRTEAAGVTGQASSLLAGRLLEQKAASCHQAFIVLCIENSFMTSSSK
NT seq
5184 nt
NT seq
+upstream
nt +downstream
nt
atggctcctcacccctgcggccgcccgggcccgctgctgctgctgctgctgccgccgctg
ctgctcacctgccgccccgccgccgcccaggctaacctcctgagcctgaactggctgtgg
tccactaggacagaagggcccccggccgaactggtctccgcgcccccgcggagcccccat
gtgcagcccggggaggacaccaccacgcactcggccccccagcatggcccctcggagcag
gggacagcccctgccagccccgcactccccgtggagaggctggagaccggccagggcagg
gcctccaccacacccgctgcctccaccgcgggcccggacacgaaggaggagaacctcgcc
ggcgtgggggccaagatcctgcgcgtggctcagggcatccggagctttgtacagctgtgg
gatgacaccacaacccccgcgggctcccccgcgacagagacgccagcccctgtgaccccc
acagcccccctcacgctggccgggccctccagcgccccccaagagaacgacacggctctt
tggctgggcagcatggccccgagctccccggacaccccgaagatggaggccggcaccccg
ccggggcccacccagctgcctccctccccgggcgggccctcactgctgccaccttctcca
ggtagagcttctctgtcctccgcgctgggtggggcccctccctgggggagcccgtcgtcc
ccggggcggccccgggatccggacagtggaggactcctgcccgtggcagcccgtcccagc
cagcggcaccgaccccccgacatccacaagcgctcgccacgtctgcttgccctggtggca
ggtcccccgggtgccctcactgctcctgcggctctctcctctgacccccccacgctggcg
gcttggatcccactcttaaccatggacaggggtgcttgggctcctcacggggctggctct
gtggggccgggtcttgctggtgtctctgcgctgctgggggcggcccctcggacccccacc
gggcagcccgtgcccggggccgctggccgctgcctgccactgcctccctccctgcccgtc
tgcggccgcctgggcatcggacgctcgtggctgcccaaccacctgcaccacgggagcagc
gaggaggtgcaggccgccgcccgggcctgggggggcctcctccagacgcgctgccaccgt
ttcctcgcctggttcttctgcctgctgctggccccgccctgtgccgcaggcccgctgccc
gcgcccccaccctgccgccagttctgcgaggccctggaggacgcgtgctggagccacctg
gacgggggcgggctgccggtcccctgcgcctcgctcccggcccgggaggacggctactgc
gtgttcatcgggccgggtgcagaaactctgggcgtggaggtggggctcctgcagctgctc
ggagagcccccgccccagcaggtgacccaggtggacgaccccgacgtggggccggccttc
gtcttcggcccggacgccaacagcggccaggccgcccgctaccacttccccagccggttc
ttccgcgacttctcgctgcacttccacgtccggcccgccacggaggacgcgggcgtgctg
ttcgccatcacggacgcggcgcaggcggtggtctccgtgggcgtgaagctgtcgggcgtg
cgtgacgggcaccagcagatccagctgctgtacacggagccgggggccgcgcggacccac
acggccgccagcttccgcctcccggccttcaccggccagtggacgcgctttgccctcagt
gtggacggcgcgaccgcggcgctgttcgtggactgcgagttgttccagcgggtgccgctg
gcgcgctccccgcggggcctggagctggagcccggcgcaggcctcttcgtggcccaggcc
ggaggagcggaccctgataagttccagggggcgatcgcggagctgagggtgcgcggggac
ccccacgtgagctccctgcactgtctggaggaggacgacgaggacagcggcggggcgtcc
ggagacttcgggagcgggctggaggagacccgggagcccgtcagggagccgtcgggtcca
tcgtccaaccccagccttcctgaggctcccccggtcacttctccaccgttggctgcgggc
gggaatgaggaaggttccagaacggaagaaatggaggaagaaaccacggtgcctgcgttg
gcagctcggaccctccccaccttggatctggtcaccgcagggagcgtttggagcctcggg
ggcagcctggaagagggtcctgccgcgcggagccctgagcctgttcccgggccgcagtgc
cctcctgggcccccagggccaccagggaaggatggcatccctggaagagacggcgagcca
ggggatcccggtgaagacgggacaccgggcgaccctgggccacagggcttccccgggacc
ccgggagacgcgggccccaagggcgagaagggggaccctggggtcgggccgagaggacct
ccaggaccccaagggcctccaggcccaccaggaccctccttcaggcatgacaagctgacc
ttcatcgacatggagggctccgggttcggcggagacctggagagcctgcggggccccaga
ggctaccccggccccccggggcccccaggcgtcccaggcctgcccggagagccaggccgc
ttcgggatgaacagctcagacgtgccaggacccgccggcctccctggtgtgcccgggcgg
aatgggccccctgggcttcctggcaccccgggaccgccaggccctccaggaagagacggg
ggaccggggaagacgggccagaaaggcagccccggcgacgcgggcgcccctggacctaag
ggagacaagggtgaccccggccccgctggcgctcctggggagaatggcttggcaggagcc
cccggaccagccggaccaccagggccccccggtccccccgggccaccaggaccaggactc
gccgcagggtttgatgacatggaaggctccggggcacccttctggtcgacggctcaagga
gccagcgggcctcagggtcccgccggcccgcccggggtcaagggggatcccggagtaacc
ggaccgccaggcgccaagggagaagttggggctgacggccctcctgggttccccggcctc
cctggcagagagggcacagctggagcccagggacccaaaggagaaaaagggacccaggga
gagaaaggcgaaccagggagggacggagtgggacagcccggcctccccggaccccccgga
cccccggggcctgtcgtctacctgtcggagcaggatagagtgctggccggcgtgcctgga
cccgagggccggccagggttcgcgggttttcccggaccagctgggccgaagggagatgtg
ggctcaaaaggccagcagggcctcccgggacccaagggtgagaagggcgagcccggcccg
gtcttcagccacgatggcagcatgctggcgcccggccagaaaggggccaagggagagcct
ggcttccgaggacccccgggtccctacgggcggccaggtcacaagggagagattggcttc
cccgggcggccgggtcgccccgggatgaacggattgaagggggagaagggggagccggga
cacgccagcgtcggcttcggtgtgaggggtccacctggtcccccagggcctccggggccc
ccagggcctcctggggtccccatctatgacagcaacgcctttacggagtccggccgccct
ggagccccaggattgccagggctccaggggccttctggacccaagggtgacaaaggagac
gtgggccctccaggaccaccagggcagttcccgttggacctcctcccgctggaggctgaa
atgaagggggagaagggggaccgaggggaccctgggccgaagggcgaacggggtgagccc
gggggtggtggattcttcggctcaagtgtgcctggcccccccggcccgccaggctaccct
gggattccgggtcccaagggagagagcattcggggccagcctggcccacctggacctcag
ggaccccctggcatcggccacgaggggcgtcagggaccccctgggccccctggacccccg
ggtcccccagggcccccttcctttcctggcccttaccggcaaaccatcagcgttcccggc
cccccgggcccacctgggccccctgggccccctggaaccatgggcacgtcctccggggtg
aggatctgggccacgtaccagaccatgctggacaaggtgcctgaggtgccggagggctgg
ctcatcttcgtggccgagagggaggagctgtacgtccgggtccgcggcgggctgcggaag
gtcctgctggaggcacggacgccactcccacgcgggacggacaacgaggtggccgccttg
cagccccctgcgggcaacccatacccccgacgggagctcacccactccacggtgcggccc
tggcgggcagatgacatcctggccagccccccacgtctgccggacccgcagccctaccct
ggggccccacaccacggctcctaccggcacttccagccggctcgccccaccggcgggccc
acccacagccacacccaccaggactaccagccagtgctgcacctggtggccctgaacagc
ccccagccgggcggcctgcgcggcatccgcggggccgacttccagtgcttccagcaggcg
cgcgctgccgggctgcccggcaccttccgcgccttcctgtcctcacggctgcaggacctc
tacagcgtggtgcgccgagccgaccgcaccggcgtgcccattgtcaacctcagggacgag
gagctgttccccagctgggaggccttgttctcgggctccgagggccagctgaagcctggg
gcccgcatcttctctttcgacggcagagacgtcctgcagcacccggcctggccccagaag
agcgtgtggcacggctcagaccccagcgggcgccggctgaccgacagctactgcgagacg
tggcggacggaggctgcgggcgtcacgggccaggcgtcttccctgctggccggccggctg
ctggagcagaaggccgcgagctgccaccaggccttcatcgtgctctgcatcgagaacagc
ttcatgacctcctcctccaagtag
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