Mycolicibacterium litorale: B1R94_09580
Help
Entry
B1R94_09580 CDS
T05032
Name
(GenBank) ribonuclease E/G
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
mll
Mycolicibacterium litorale
Pathway
mll03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mll00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
B1R94_09580
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mll03019
]
B1R94_09580
03009 Ribosome biogenesis [BR:
mll03009
]
B1R94_09580
Enzymes [BR:
mll01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
B1R94_09580
Messenger RNA biogenesis [BR:
mll03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
B1R94_09580
Ribosome biogenesis [BR:
mll03009
]
Prokaryotic type
rRNA processing factors
B1R94_09580
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
IF2_N
PCB_OB
Motif
Other DBs
NCBI-ProteinID:
AQT79469
LinkDB
All DBs
Position
2053684..2056650
Genome browser
AA seq
988 aa
AA seq
DB search
MAEDDLYQDLSETPSQPQWVPPTATAGEDLPDRLRVHSLARVLGTTSRRVLDALSELDGR
TRSAQSSVDRTDAVRVRDVLAAGADQSAAEPPAPEVAEPVTAAAAEVDEPATEVTDVATD
VTDVADEASEVVDEPESRLILETATVEQSVFMPLFVAPQPVKAVPAERDDEGIDENDEDE
DDESGADTDGDQSDRPANRRRRRGRRGRGRGRGEQGGPDGEDDSERPEAADETPDTADET
DGDEDNGEDESAGGEAATRRRRRRRRRKSGGGDDGDAASSDDPPNTVVHERAPRSEKERD
SDAIQGISGSTRLEAKRQRRRDGRDAGRRRPPILSEAEFLARREAVERVMVVRDKIRTEP
PHEGARYTQIAVMEDGVVVEHFVTSAASASLVGNIYLGIVQNVLPSMEAAFVDIGRGRNG
VLYAGEVNWEAAGLGGAQRKIEQALKPGDYVVVQVSKDPVGHKGARLTTQVSLAGRYLVY
VPGASSTGISRKLPDTERQRLKEILRDVVPDDAGVIIRTASEGVKEEDIRGDVERLQDRW
NKIAAEAERVKGNKAGAAVALYEEPDVLVKVIRDLFNEDFSGLIVSGDSAWETITEYVNS
VAPELVSKLTKYDPPGGPDGPDVFAVHRIDEQLVKAMDRKVWLPSGGTLVIDRTEAMTVV
DVNTGKFTGAGGNLEQTVTKNNLEAAEEIVRQLRLRDIGGIVVIDFIDMVLESNRDLVLR
RLTEALARDRTRHQVSEVTSLGLVQLTRKRLGTGLVEAFSTTCTHCAGRGIVLHADPIDT
TAAVARKAESNSGGGGGGGGGRRGKRGKKARTDEPAVVRVPSHVPGEHPMFKAMAAANGR
PEDDEAEEELADELEREAEVDEVEDGTVATAPAEDDVDEDVEESDELDADDDESDESDED
DEDDEDDEDIDVDLDEDDEDIDDEDDDLDEDDDDEDDDGDDDDEVDDLDEDDETDAEDYE
PVVTPAPVVSARRPRRRAAARPAGPPVS
NT seq
2967 nt
NT seq
+upstream
nt +downstream
nt
gtggccgaagatgacctctatcaggatctatccgaaaccccgagccagccgcagtgggtg
ccccctaccgcgactgcgggggaggatctgcctgaccggctgagggtgcattcgctggcg
agggtgcttggcaccaccagtaggcgagtgctcgatgccctgagcgaactcgacggccgc
acgcgcagcgcgcagtccagcgtcgaccgcaccgacgcggtgcgggtgcgcgacgttctt
gccgccggcgccgaccagtccgccgccgagcccccggcacccgaggtggcagagccggtg
acggcggcggccgccgaggtcgacgagccggcgacggaggtcactgacgtggccaccgac
gtcaccgacgtggccgatgaggcctccgaggtggtcgacgagccggaatcgcggctcatt
ctggagaccgccaccgtcgagcagtcggtgttcatgcccctgttcgtcgccccgcagccg
gtcaaggccgtccccgcggagcgcgacgacgagggcatcgacgagaacgacgaagacgag
gacgacgagtccggcgccgacaccgacggtgaccagtccgaccggccggccaaccggcgg
cgccgtcgcggccgccgtggccgtggccgtggccgtggtgaacagggtggcccggacggc
gaggacgactccgaacgccccgaggctgccgacgaaacgcccgacaccgccgacgagacc
gacggcgacgaggacaacggcgaagacgaatcggcgggtggcgaagccgcgacccgccgc
cgccggcgccgccgccgccgcaagtccggtggtggcgatgacggtgacgccgcgtcgtcg
gatgatccgccgaacacggtcgtgcacgagcgcgccccgcgcagcgagaaagaacgcgac
tccgatgccatccagggcatcagcggctccacccggctggaggccaagcgccagcgccgc
cgcgacggccgtgacgccggccgccgtcggccgccgatcctgtcggaggcggaattcctg
gctcgccgggaggcggtcgagcgagtgatggtggtgcgcgacaagatccgcaccgagccg
ccacatgaaggcgcccgctacacccagatcgccgtcatggaagacggtgtggtcgtcgag
cacttcgtgacctccgccgcatcggcctccctggtcggcaacatctacctcggcatcgtg
cagaacgtgctgccctcgatggaggcggccttcgtcgacatcggccgtggccgcaacggc
gtgctgtacgccggtgaggtgaactgggaagccgcgggtctgggcggcgcgcagcgcaag
atcgagcaggcgctcaagcccggtgactatgtcgtcgtccaggtcagcaaggacccggtc
ggtcacaaaggtgcccgcctgaccacccaggtctcactggccggccgctacctggtctac
gtgccgggcgcgtcgtcgaccgggatcagccgcaagctgcccgacaccgaacggcagcgg
ctcaaagagatcctgcgcgatgtggtgcccgacgacgccggcgtgatcatccgcaccgcc
tcagaaggcgtgaaggaagaggacatccgcggggatgtcgaacgcctccaggaccgctgg
aacaagatcgccgcggaggccgagcgggtcaagggcaacaaagccggtgccgccgtcgcg
ctctacgaagagcccgatgtgctggtcaaggtgatccgcgacctgttcaacgaagacttc
tcgggcctgatcgtatccggtgacagcgcctgggaaaccatcaccgagtacgtcaattcg
gttgcgccggagttggtttcgaagctgaccaagtatgatcccccgggaggtccggatggg
ccggacgtgttcgcggtgcaccgcatcgacgagcagctggtcaaggcgatggaccgcaag
gtgtggctgccctccggtggcaccctggtgatcgaccgcaccgaggcgatgaccgtcgtc
gacgtgaacaccggcaagttcaccggtgccggcggcaatctcgagcagacggtcaccaag
aacaatctcgaggcggccgaggagatcgtgcgccagctgcggctgcgcgatatcggcggc
atcgtggtcatcgacttcatcgacatggtgctggagtccaaccgcgacctggtgttgcgg
cggctcaccgaggcgctggcgcgcgaccgcacccgccaccaggtctccgaggtgacatcg
ctgggcctggtgcagctgacccgcaagcggcttggcaccggcctggtggaggcgttctcg
acgacgtgcacgcactgcgccggccgcggcatcgtgctgcacgccgacccgatcgacacg
accgccgcggtggcgcgcaaagccgagtcgaattccggcggcggcggcggtggtggcgga
gggcggcgcggcaagcgcggcaagaaggcccgcaccgacgagccggccgtggtgcgggtt
cccagccacgtcccgggcgagcatccgatgttcaaggccatggccgcggccaacggcagg
cccgaggacgacgaggccgaggaggagttggccgacgaactcgagcgggaagccgaggtc
gacgaggtcgaagacggcacagtcgccaccgcaccggccgaggacgacgtggatgaggat
gtcgaggagtccgacgagttggacgccgacgacgacgagtccgatgagtccgacgaggac
gacgaggacgacgaggacgacgaagacatcgacgtcgacctcgatgaggacgacgaagac
atcgacgacgaagacgatgacctcgacgaggatgatgacgacgaggacgacgacggcgac
gatgatgacgaggtcgatgatctcgacgaggacgacgagacggacgccgaggactacgag
cccgtggtgaccccagcgccggtcgtttcggcacgtcgtcctcgacgccgcgccgccgcc
cgccccgcgggtccgccggtgtcatga
DBGET
integrated database retrieval system
