Mycobacterium lepromatosis: MLPF_0342
Help
Entry
MLPF_0342 CDS
T08064
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
mlm
Mycobacterium lepromatosis
Pathway
mlm03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mlm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
MLPF_0342 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mlm03400
]
MLPF_0342 (mfd)
Enzymes [BR:
mlm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
MLPF_0342 (mfd)
DNA repair and recombination proteins [BR:
mlm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
MLPF_0342 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
DUF3638
DUF1474
Motif
Other DBs
NCBI-ProteinID:
UKN41634
LinkDB
All DBs
Position
352706..356461
Genome browser
AA seq
1251 aa
AA seq
DB search
MTAPGPACSDTPILGLVELALTAPTFGQLIELASTRPAELSLTGPACVRLFVASALARLG
PLLVVTATGREADDLTAELRGVFGDAVAVFPSWETLPHERLSPGVDTVGTRLIVLRRLAH
PDDARLGPPLQVVVTAVRSLLQPMTAQLGLVEPVTLSVGDEIDFERVIARLIELAYTRVD
MVGRRGEFAVRGGILDIFGPTAEHPVRVEFWGNQITEIRVFSVVDQRSIPEIGVDTLIAV
ACRELLLSDDVRARAVELAAQAAARRPTGEAAVSGSVTDVLAKLAEGIPVDGMEALLPVL
CPGEYTLLTDQFAASTPVLLCDPEKVRVQAADLIKTDRAFFEASWSIAAIGADNPAPIDV
EQLDGSGFVELSDVQAATIRSGHPWWTLSQLPDESALELDIRAAPSTRGYQHDIDGIFAM
LRAHVATGGYAAIVTPGTGTAHRVLERLAESDIPGVMLEPAAAPGLGLVGVLKGPLIDGV
VIPGANLVIITETDLTGSRATAVDGKRLVAKRRNTVDPLALTAGDLVVHDQHGIGRFVEM
IERTVGGVRREYLVLEYASNKKSRQADRLYVPMDSLNQLSRYVGGQAPALSRLGGSDWAN
TKTKARRAVREIAGELVSLYAKRQASPGHAFGPDTPWQAEMEDAFGFTETVDQLTAINEV
KGDMEKSVPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLAEQHLQTFTER
MAGFPVTVKGLSRFTDAAESRAVIDDLVKGSVDIVIGTHRLLQTGVRWKDLGLVVVDEEQ
WFGVEHKEHIKSLRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEKRYPVLTYVGP
HDDKQVAAALRRELLRGGQAFYVHNRVSSIYQAAARVCGLVPEARVVVAHGQMLEDRLEN
TMRGFWNHEYDILVCTTIVETGLDIPNANTLVVERADTLGLSQLHQLRGRVGRSHERGYA
YFLYPPQAPLTEIAYDRLVTIAQNNELGAGMAVALKDLEIRGAGNVLGVEQSGHVAGVGF
DLYVRLVGEAVEAYRAAADGKTAITVEEPKDVRIDLPVDAHLPSDYIASDRLRLEGYRRL
AAASSDTEVAAVVDELIDRYGTLPEPVRRLVAVAQLRLLCRSSGIIEVTSPSAATVRLSP
MSLLDSAQVRLKRMYPGAQYRATTATVQVPIPRAGSSGGALGAPRIRDVELVQAVADLIT
TLQGIPRKDIGITKPTSKRVITSSTKVSLPAPDGPTRTTPPLLQDRPPVSG
NT seq
3756 nt
NT seq
+upstream
nt +downstream
nt
atgaccgcaccggggcctgcctgctcagacaccccaatcttggggctcgttgaattggca
ctcaccgcgccgaccttcggccagctcatcgagctcgcgagcactagaccagctgaattg
agcctgactggccctgcctgtgtgcggttgttcgtcgccagtgcactggctcggctgggt
cccttgctggtggtcaccgccaccggtcgcgaagcagatgatcttaccgccgagttacgc
ggcgtcttcggcgacgcggtggcggtgttcccgtcctgggagacgttgccacacgaacga
ctgtcacctggcgtagacaccgtcggcacccggttgatagtgctgcgccgactagcccat
cccgacgatgcccggttgggtccccccttgcaagtggtggtgaccgcggtgcgttcgctg
ctgcagccgatgacagcgcagctgggtttggtggaacctgttaccttgagcgtcggcgat
gagatcgattttgaacgggttatcgcgcgcttgatcgagctggcatatacccgggtggat
atggtcggccggcgcggtgagttcgctgtccgcggtgggattctcgacatcttcggcccg
accgccgaacatccggtgcgtgtcgaattctggggtaaccagattaccgagatacgggtg
ttctcggtggtcgatcagcgctctattcccgagatcggtgtcgacacgttgattgcggtc
gcctgccgagaactcctgctcagcgacgatgtgcgggcgcgggccgtcgagttggccgcg
caggcggctgcacggcggccgacaggggaagctgctgtctccggcagcgtcactgacgtg
ttggccaagctggccgaggggataccggtcgacgggatggaggcgctgctcccggtactt
tgtcctggcgagtacacgctgctgactgaccagttcgctgctagcacgccggtgttgttg
tgtgacccggaaaaggtccgcgttcaggcggccgatttgatcaagaccgatcgggcattc
ttcgaggcgtcgtggtcgatagccgccataggtgccgacaacccggcacctatcgatgtc
gagcagttggacgggtcggggttcgtcgaattaagcgatgtgcaggccgccaccatccgg
tccggtcatccgtggtggacgttgagccaactgcccgacgagtcggcgttggagctcgac
atccgagcggcaccgtcgacacgtgggtatcagcatgacatcgacggtatttttgcgatg
ctgcgtgcgcatgttgccaccggtggatatgcggcgatcgtcacgcctgggaccggaacc
gcccatcgagtgttggagcgacttgccgagtctgacattccgggtgtgatgctggaaccg
gccgccgcaccaggacttggcctggtcggggtgctcaagggtccgctgatcgatggtgtg
gtgataccgggcgccaacctggtgatcatcaccgaaaccgatctgaccggcagtcgggcg
acggccgtcgacggcaagcgactggtggccaagcggcgcaacaccgtcgatccgttggca
cttaccgctggcgacttggtggtgcatgatcagcacggcatcggacggttcgtggagatg
atagagcgcactgttggcggcgttcgtcgcgagtacctggtgctggaatatgcttcgaat
aagaaaagtcggcaggctgataggctgtatgttccgatggattcgctgaatcagttgtcg
cggtatgtaggcgggcaggcgccagcgctgagccggttaggcggcagcgactgggccaac
accaagaccaaggcccgccgcgcggtgcgagaaatcgcgggtgagttggtgtcgttatat
gccaaacgccaggccagcccaggacacgcattcgggccggacacgccctggcaggccgag
atggaggacgcgttcggcttcaccgagaccgtcgatcagcttaccgcgatcaacgaggtc
aagggcgatatggaaaagtcggtgccgatggaccgggtaatctgcggcgacgttggttac
ggcaagaccgagatcgcggtgcgtgcggcgtttaaagcggtgcaggacggcaagcaggtt
gccgtgttggtaccgaccacgctgctggccgaacagcatttgcagacgttcaccgaacgg
atggccggattcccggtgaccgtcaaggggttgtcacggttcaccgacgccgccgaatcc
cgcgcggtgatcgacgaccttgtcaaggggtcggtggacatcgtgatcggcacacatcgg
ctactgcagactggggtgcgctggaaggatttgggtctggtcgtggttgacgaggagcag
tggttcggcgtcgagcacaaggagcacatcaagtcgctgcgcacccacgtcgacgtgctg
accatgagcgccaccccgatcccgcgcaccctagagatgagcttggctgggattcgcgag
atgtccacgatcctgacgccgcctgaaaagcgctacccggttttgacttatgtcggcccg
cacgatgacaagcaggtagcggccgcgttgcggcgcgagctgctgcgcggcgggcaggcg
ttttatgtgcataaccgggtcagttccatctatcaggccgccgcccgggtgtgtggcttg
gtacccgaagcgcgggtggtcgtcgcgcatgggcagatgcttgaggatcggctggaaaac
acaatgcgggggttctggaaccacgaatacgacatcttagtgtgcactacgatcgtagag
accggcttggacatccccaacgccaacacgctcgtcgtcgagcgtgccgataccttaggt
ctgtcccagctgcaccagctgcggggtcgggtcggtcgtagccacgagcgtggttacgcc
tacttcctctacccgccgcaggcgccgctgacggagatcgcctacgaccggttggtgacc
atcgcacagaacaatgagctgggcgcgggcatggcggtcgcgctcaaggacctagagatc
cgcggcgccggcaacgtgctaggtgttgagcagtccgggcacgtagcaggagtcggcttc
gacctctatgtgcggctggtgggtgaggccgtcgaggcgtaccgagccgctgccgacggc
aaaaccgctattacggtagaggagcccaaggacgtacggattgacttgccggtggatgca
cacctgccgtcagattacatcgccagtgaccggctccgacttgagggctaccggcggcta
gccgcggcgtcttctgacacagaggtcgcagccgttgtggacgagctcattgaccgctat
ggaacactgcccgaaccggtccgtcggctggtagcggtggctcagttgcggctgctgtgc
cgcagctcgggcatcattgaggtgacctccccgtcggccgcgaccgtgcggttgtccccg
atgtcgctgctagattccgcccaagtgcggttaaaacggatgtatcccggagcacagtac
cgtgccaccacggccacggtccaggttcctatcccgcgagccggcagctccgggggagct
ttaggcgctccgcgtatccgcgatgtggaattggttcaggctgtagccgacttgatcacg
acgctgcagggtataccgaggaaagatattggcataacgaaaccgacatcgaagcgagta
ataacaagttcgacgaaggtgagcttaccagctccggacggaccgaccagaaccaccccg
ccgttattgcaagaccggcccccggtgtccggttga
DBGET
integrated database retrieval system
