Mesorhizobium loti NZP2037: A9174_21620
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Entry
A9174_21620 CDS
T04711
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
mln
Mesorhizobium loti NZP2037
Pathway
mln03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mln00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
A9174_21620
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mln03019
]
A9174_21620
03016 Transfer RNA biogenesis [BR:
mln03016
]
A9174_21620
Enzymes [BR:
mln01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
A9174_21620
Messenger RNA biogenesis [BR:
mln03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
A9174_21620
Transfer RNA biogenesis [BR:
mln03016
]
Prokaryotic type
tRNA degradation factors
A9174_21620
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
S1
Motif
Other DBs
NCBI-ProteinID:
ANN59072
LinkDB
All DBs
Position
complement(4495590..4497896)
Genome browser
AA seq
768 aa
AA seq
DB search
MARRITGRSHGDPRTADTRAKVKDDYRPSRDEILRYIAENPDRAGKRDIAKAFALRGDDR
IWLKDILRDLQDEGVLTKERKRLARVGALPHVAVLDIFGRDGDGILLAHPAESVSTGEPP
VVSIRVSRSGNGPAPGIGDRVLAKTFPTDDPSGPAYTGRVMKIFEKRTDAVLGVFRVLKD
GTFRIEPVERRQPELIVDKEFQNGAENGDLVEVEPARASRYGLPRAKVLNVLGSLTSEKA
VSMIAIHAHDIPHIFPADVIAESEAVKPATLDHREDWRDLPLITIDPADAKDHDDAVFAT
PDPDEKNPGGVIATVAIADVAAYVRYGTALDREALKRGNSVYFPDRVVPMLPERISNDLC
SLREGQDRPALAVRMTFSADGHKIRHSFHRVMMKSAAKLAYPQAQAAIDGVPDDKTGPIL
DTVLKPLWDAYAILKRGRAGRQPLELDLPERKIMLKPDGTVDRVIVPERLDAHKLIEEFM
IQANVAAAETLEAKKQALVYRVHDAPSLAKQESLREFLQTLGLSLARGAQMRPSQFNGIL
ERVRGADNEALVNEVVLRSQSQAEYSPGNIGHFGLNLRRYAHFTSPIRRYADLIVHRGLI
AALGLGPGGLTQDEAARLEDVAILISGTERRAMAAERDTVDRLIAAYLAERIDDRFDARI
SGVTKSGLFVQLPQYGADGFIPVSTLGGDYYIYDETARSLFGERTGKGYQLADHVEVRLV
EVAPMAGAMRFEMLTDPKPLPGSTRSFHKAKGRARASQSRPGSRGRRR
NT seq
2307 nt
NT seq
+upstream
nt +downstream
nt
gtggcgcgcaggatcaccggacggagccacggcgatccgcgcaccgccgatacgagggcc
aaggtcaaggacgactaccggccttcgcgcgacgaaatcctgcgctatatcgccgaaaat
cccgatcgtgccggaaaacgcgacatcgccaaggctttcgcgctgcgtggcgacgaccgc
atctggctgaaagatattttgcgcgacttgcaggatgaaggcgtgctcaccaaggagcgc
aagcggctggcccgcgtcggcgccctgccccatgtcgccgtgctcgacatctttggccgt
gacggcgacggcattttgctggcccacccggcggagtccgtaagcaccggcgagccacct
gtcgtctcgatccgcgtttcgcgcagtggcaacggtccggcgccaggcattggcgaccgg
gtgctggccaagaccttcccgaccgatgatccgtccggccccgcctacaccggccgggtc
atgaagatcttcgagaagcgcaccgatgccgtcctcggcgtcttccgcgtgcttaaggac
ggcaccttccgcatcgaaccggtggaacggcgccagcccgaactgatcgtcgacaaggaa
ttccagaacggcgctgagaatggcgacctggtcgaggtcgagccggcgcgggcttcccgc
tacgggctgccgagagccaaggtgctcaatgtgctcggctcgctgaccagcgaaaaagcg
gtctcaatgatcgccatccacgcccacgacatcccgcacatcttcccggccgatgtcatc
gccgaatccgaagccgtcaagccggcgacgctggatcaccgtgaggactggcgcgacctg
ccactgatcaccatcgatccggccgacgcgaaggaccatgacgacgcggtcttcgcgacg
cccgatcccgacgaaaaaaacccgggcggcgtgatcgccaccgtggcgatcgccgacgtc
gcagcctatgtccgctatggcacggcgctggaccgcgaggccttgaagcgcggcaattcg
gtctatttcccggatcgcgtcgtgccgatgctgcccgagcgcatctcgaacgacctctgt
tcgctgcgcgagggccaggatcgcccggcgctggccgtgcgcatgaccttctccgccgac
ggccacaagatccggcactccttccaccgcgtgatgatgaaatcggcggcgaagctcgcc
tatccgcaggcgcaggcggctatcgacggcgtgcccgacgacaagaccggtccgatcctc
gacacggtgctgaagccgctctgggatgcctatgcgatcctcaagcgcggtcgcgccggc
cgtcagccgctcgaactcgacctgccggagcgtaagatcatgctcaagccggatggcacg
gtcgaccgtgtcatcgtgccggaacgcctcgatgcccataagctcatcgaagaattcatg
atccaggccaatgtcgccgccgcagagacgctggaggcgaagaagcaggcgctggtctac
cgcgtgcacgacgcgccgtcgctcgccaagcaggaatcgctgcgcgaattcctgcagacg
ctcggcctatcgctggcgcgcggcgcgcagatgcggcccagccagttcaacggcattctc
gagcgcgtgcgcggcgccgacaatgaggcactggtcaacgaagtggtgctgcgctcacag
agccaggccgaatattcgcccgggaatatcggccatttcggcctcaacctgaggcgctac
gcccattttacctcgccgatccgccgctacgccgatctgatcgtgcatcgcgggcttatt
gccgcactcggcctcggtccgggaggactgacacaggacgaagcagctcgtctcgaagac
gttgcgatcctgatctccggcacggaacggcgtgccatggcggccgagcgcgacacggtc
gaccggctgattgcagcctatctcgccgaacgcatcgacgaccggttcgacgcccgcatc
tccggcgtcaccaaatcaggactatttgtccaattgccgcaatatggcgccgatggcttc
atccccgtgtcaactctgggcggcgattactatatatacgacgaaaccgctcgctcgctc
ttcggagaacgcacgggcaaaggctaccagcttgcggaccatgttgaggtccggctcgtc
gaggtggcaccgatggccggcgccatgcgcttcgagatgctgaccgacccgaagcccctg
ccaggctccaccaggtcgttccacaaggccaagggccgcgcccgtgcgtcgcaatcgcga
ccaggttcgcgcggcaggagacgataa
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