Mesorhizobium japonicum MAFF 303099: mll0827
Help
Entry
mll0827 CDS
T00043
Name
(GenBank) transcription repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
mlo
Mesorhizobium japonicum MAFF 303099
Pathway
mlo03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mlo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
mll0827
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mlo03400
]
mll0827
Enzymes [BR:
mlo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
mll0827
DNA repair and recombination proteins [BR:
mlo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
mll0827
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
Helicase_C
CarD_TRCF_RID
UvrB_inter
ResIII
Cas3-like_C_2
RecG_dom3_C
AAA_22
UB2H
SecA_DEAD
Motif
Other DBs
NCBI-ProteinID:
BAB48334
UniProt:
Q98LX9
LinkDB
All DBs
Position
complement(656418..659915)
Genome browser
AA seq
1165 aa
AA seq
DB search
MSLIPTIGLPKGRAGQFIVDGVADGYEAFALVQAALEIAPDKPVLFVARDGQRLPVIIEA
LAFAAPGLPVLELPAWDCLPYDRVSPGSDAAAKRLDALTAMIALAKKPHRAVILTTANAL
LQRIPPADLVEAQTFHARPGNQIDMNALIARLETSGFERVPTVRGIGEFAVRGGILDLFA
PGWAEALRLDFFGDTLESIRVFDAATQRTTGQRKSMALQAMSEVALTPETISRFRRSYIE
AFGAPQRDDGLYAAVSEGRRFAGMEHWLPFFYERLETVFDYLPDTPVVFDHLAHEALAER
HTLILDHYEARKKQADAALKDAVPYKPVAPDLLYLSPENLIASLGPREAIDFTPFDAPDA
GAKKVYHAGSRHGRSFVEERADPNVNVFDVVVRHIADERAARRRIVIAGWTEGSLDRLGQ
ILAEHHLGNLKQVETLAEAEQLDPGQAALAVLPLESGFETERLVVVAEQDILGDRLIRRS
KRKKRASDFIAEASALSTGDIVVHADHGIGRFIGLRTIEAVGAPHDCLEIHYAGDDRLFL
PVENIELLSRYGSDSAEATLDKLGGGAWQSRKAKLKRRLLDMAGQLIRIAAERQMRAAPA
LVPAEGLYDEFAARFPYEETDDQQTAIDSVRDDLGAGKPMDRLICGDVGFGKTEVALRAA
FIAAMEGFQVAVVVPTTLLSRQHFKTFSQRFSGLPIRVAQASRLVGAKELAETKKALAEG
QVDIVVGTHALLGSSISFKNLGLLIIDEEQHFGVKHKERLKDLKTDVHVLTLSATPIPRT
LQLALTGVRELSLIATPPVDRMAVRTFISPFDPLVIRETLLRERYRGGHSFYVVPRISDL
SEIHEFLKESVPELKVAVAHGQMPPGELDDIMNAFYDGQYDVLLSTTIVESGLDIPTANT
LIIHRADMFGLSQLYQLRGRVGRSKVRAYALFTLPANRKLTDTAERRLKVLQSLDTLGAG
FQLASHDLDIRGAGNLLGEEQSGHIKEVGFELYQQMLEEAVAEVKDSGEVQDGGWSPQIA
VGTAVMIPESYVPDLQLRLALYRRLGDLENTEEIDAFGAELIDRFGPLPDEVKHLLKIVF
IKALCRKANVEKLDAGPKGVVIHFRKREFSNPVGLVKFIGEQGSLAKIRPDHSVVFTRDW
PTAEKRLAGSAVVMTQLARLVEKAA
NT seq
3498 nt
NT seq
+upstream
nt +downstream
nt
atgagcctcatccccactattggtctgccgaaaggccgtgccggccagttcatcgtcgac
ggtgtcgccgatggctatgaggccttcgcgctggtgcaggccgcgcttgaaatcgcaccc
gacaagccggtgctgttcgtggcgcgcgacggccagcgcctgcctgttatcatcgaggcg
ctggccttcgccgcccccggcctgccggtgctggaactgccggcctgggactgtctgccc
tacgaccgcgtctcgcccggctcggacgccgccgccaagcgcctcgacgcgctgacggcg
atgatcgcgctggcgaagaagccgcaccgcgccgtcattctcaccaccgccaatgcgttg
ctgcagcgcattccgccggccgaccttgtcgaggcacagacctttcatgcgaggcccggc
aaccagatcgacatgaacgcgctgatcgcgcggctggaaacgtccggcttcgagcgcgtg
ccgacagtgcgcggcatcggcgaattcgcggtacgcggcggcattctcgacctcttcgcc
cccggctgggccgaggcgctgcgcctcgatttcttcggcgatacgctggaatcgatccgc
gtcttcgatgccgccacgcagcgcaccaccggccagcgcaagtcgatggcgctgcaggcg
atgagcgaagtggcgctgacgcccgaaaccatcagccgcttccgccgctcctacatcgaa
gcctttggcgcgccgcagcgcgacgacgggctctatgcggcagtaagcgagggcaggcgg
ttcgccggcatggagcactggctgccgttcttctacgagcggctggagacggtgttcgac
tatctaccggatacgcctgtcgttttcgaccatctggcgcatgaggccctggccgagcgc
cacacgctgatcctcgaccactatgaagcgcgcaagaagcaggccgacgctgcgctgaag
gatgcggtcccctacaagccggtggcgccggatctgctctatctctcgccggaaaacctg
atcgcctcgctcgggccgcgcgaagcgatcgacttcacgcccttcgacgcgcccgatgcc
ggcgcgaaaaaggtctatcatgccggctcgcgccatggccgcagctttgtcgaggagcgc
gccgatccgaacgtcaacgtcttcgatgtcgtcgtcaggcatatcgccgacgagcgcgcc
gcacgtcggcgtattgtcatcgccggctggacggaaggctcgctcgaccggcttggccag
atcctggccgagcaccatctcggcaatctcaagcaggtcgagacgcttgccgaagccgaa
cagctcgatccggggcaggcggcgctggccgtgctcccgctcgaatccggcttcgagacc
gaaagactggtcgtcgttgccgaacaggatattctgggcgaccggctcatccggcgttcg
aagcgcaagaagcgcgcatccgacttcattgccgaggcctcggccctgtcgaccggcgat
atcgtcgttcatgccgaccatggcatcggccgcttcattggcctgcgcaccattgaggcg
gttggtgcgccgcatgattgcctggaaatccactacgccggcgatgaccggctgtttctg
ccggttgaaaacattgagcttctgtcgcgttatggctccgactccgccgaggcgacgctg
gacaagctgggtggcggcgcctggcagtcacgcaaggccaagctgaagcggcgcctgctc
gacatggccgggcagctgatccgtatcgccgccgaacggcagatgcgcgcagcaccggcg
ctggtcccggccgaggggctctatgacgagtttgccgcgcgtttcccttatgaggagacc
gacgaccagcagacggcgatcgactcggtgcgcgacgacctcggcgctggcaagccgatg
gaccggctgatctgcggcgatgtcggcttcggcaagaccgaagtggcgctgcgtgccgcc
ttcatcgcggcgatggaagggttccaggtcgcggtcgtggtgccgacgacattgttgtcg
cgccagcacttcaagaccttttcccagcgtttctcaggccttcccatccgcgtcgcccag
gcctcgcggctggtcggcgccaaggaactggcggagacgaagaaggctttggccgaaggg
caggtcgacatcgttgtcggcacccatgcgctgctcggttcgtcgatctcgttcaagaat
ctcggcctgctgatcatcgacgaggagcagcactttggcgtcaagcacaaggagcggctg
aaggatctgaagaccgatgtccatgtgctgacgctgtcggcgacgccgatcccgcgcacg
ctgcaactggcgctgaccggggtgcgcgagctgtcgttgatcgccacgccgccggtcgac
cgcatggcggtgcgcaccttcatctcgcccttcgatccgctggtcattcgcgagacgctg
ctgcgcgagcgttatcgcggaggacactccttctatgtcgttccgcgcatcagcgatctc
tcggaaatccatgagttcctgaaggaatccgtgcccgaactgaaagtggcggtggcccac
ggccagatgccaccaggcgaactcgacgacatcatgaacgccttctatgacggccagtac
gacgtgcttctgtcgacgaccatcgtcgaatccggcctcgacatcccgaccgcaaacacg
ctgatcatccatcgcgccgacatgttcggcctctcccagctctaccagctgcgaggtcgc
gtcgggcgttcgaaggtgcgcgcctatgcgctgttcacgctgccggccaaccgcaagctc
accgacacggccgagcgccgtctgaaggtgctgcagtcgctcgacacgctgggcgccggc
ttccagctcgccagccacgatctcgatataaggggcgccggcaatctcttgggcgaagag
cagtccggccatatcaaggaggtcggcttcgagctctaccagcagatgctggaagaggcc
gtcgccgaggtgaaggattccggcgaggtccaggatggcggctggtcgccgcagatcgcc
gtcggcacggcggtgatgatcccggaaagctatgtgccggacctgcagctcaggctggcg
ctctaccgccgtctcggcgacctcgaaaacaccgaggagatcgatgccttcggcgccgag
ctgatcgaccgtttcggcccactgccggacgaggtgaagcatctgttgaagatcgtcttc
atcaaggcgctctgccgcaaggccaatgtcgagaagctcgacgccggaccgaagggtgtc
gtcatccatttccgcaagcgcgagttctccaacccggtcggcctggtcaagttcatcggc
gagcagggctcgctggccaagatccggccggaccacagcgtcgtcttcacccgcgactgg
ccgacagcggagaaacggttggcgggctcggcggtggtcatgacgcagttggcgcgtctg
gtggagaaggcggcctga
DBGET
integrated database retrieval system
