Mycobacterium lepraemurium: MLM_1008
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Entry
MLM_1008 CDS
T05534
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
mlp
Mycobacterium lepraemurium
Brite
KEGG Orthology (KO) [BR:
mlp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
MLM_1008
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mlp03400
]
MLM_1008
Enzymes [BR:
mlp01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
MLM_1008
DNA repair and recombination proteins [BR:
mlp03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
MLM_1008
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
ATA27825
LinkDB
All DBs
Position
982113..984647
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AA seq
844 aa
AA seq
DB search
MRAKCTVDQGGLTKFSIRGPRRRARHRRRQQPIYGHSEIRHTGVLVAGTCVAASHLAARV
SAADCTLASAAPARRFSSMNAPRAWPAEPTATPRVKLTNADKVLYPATGTTKADVFDYYT
RIADVMIPHIAGRPVTRKRWPNGVDQESFFEKQLASSAPDWLPRASVTHRSGTTTYPIID
SATGLAWIAQQAALEVHAPQWRFVAEWTRSRAEELKPGPATRLVFDLDSGEGVTMAQLAE
VARAVRDLIDGIGLQTFPLTSGSKGLHLYTPLTEPVSSKGATVLAKRVAQQLEKTMPKLV
TSTMTKSLRAGRIFVDWSQNNGSKTTIAPYSLRGRDHPTVAAPRTWDELDDPALRHLRYD
EVLTRVARDGDLLAELDASDNQTPVPDRLTKYRSMRDASKTPEPVPAAKPAAGQGNTFVI
QEHHARRLHYDFRLERDGVLVSWAVPKNLPDTPAVNHLAVHTEDHPLEYGGFEGVIPKGE
YGAGRVVIWDSGTYDAEKFQDDEVIVNLHGRKISGRYALIQTQGDQWLAHRMKDQNVFDF
DTIAPMLATHGSASALKASQWAFEGKWDGYRLLVEVDHGTLRVRSRRGREVTGEYRELCS
LAKALEDNHAVLDGEAVVLDKRGVPNFHEMQNRGKGVRVEFWAFDLLYLDGRSLLRARYR
DRRKLLEMLASGGALTVPELLPGDGDQALQQSAELGWEGVIAKRRDSTYQLGRRSSSWIK
DKHWNTQEVVIGGWKAGEGGRSSGIGSLLMGIPGPGGLHFAGRVGTGFTERDLANLKKML
APLRTDQPPFDAPLPRSEAKGVTFVEPVLVGEVRYSEWTPDDRLRQSSWRGLRPDKEASE
VVRE
NT seq
2535 nt
NT seq
+upstream
nt +downstream
nt
ttgcgggccaaatgtaccgtcgatcaagggggtctgaccaagttcagtattcggggcccg
cgccgccgcgcgcggcatcgccgccgtcaacagccgatttacgggcacagtgaaattcgc
cacaccggggtgttggtcgccggcacctgcgtcgccgcctcgcaccttgcggctcgcgtg
tcggccgccgattgcaccctggcgtcggcggcaccggcgcgtaggtttagcagcatgaac
gcgccgcgcgcttggcccgctgagccgacggcgacgccgcgggtgaaattgactaacgcc
gacaaggtgctctatcccgcgacgggaaccaccaaagccgacgtcttcgactactacacg
cggatcgccgacgtgatgatcccgcacatcgccgggcgtccggtcacccggaagcgctgg
cccaacggcgtcgatcaggaatcgttcttcgagaagcagctggcctcctcggcaccggac
tggctgccgcgcgccagcgtgacccaccgatccggcacgacgacctatccgatcatcgac
agcgccaccggcctggcctggatcgcccagcaggcggcgctggaggtgcacgcgccgcag
tggcggttcgtcgcggagtggacccgaagccgggccgaagaactcaaacccggcccggcg
actcgactggtgttcgacctcgactcgggcgaaggcgtgacgatggcccagctcgccgag
gtggcgcgcgccgtccgcgacctgatcgatgggatcgggctgcagacgttcccgctcacc
agcggcagcaagggactgcacctgtacacgccgctgacggagccggtgagcagcaaaggc
gccaccgtgctggccaaacgcgttgcgcagcaactggaaaagaccatgccgaagctggtc
acgtcgaccatgaccaagagcctgcgggcgggaaggatctttgtggactggagccagaac
aacggctccaagacgaccatcgcgccctattcgctgcgcgggcgcgaccaccccaccgtc
gccgcgccgcgcacctgggacgaactcgacgacccggcactgcgtcacctgcgctacgac
gaagtgctgacccgggtcgcccgcgacggtgacctgctcgctgagctggacgcctccgac
aaccagacaccggtgccggaccgcctgaccaaataccgcagcatgcgcgacgcctccaaa
acacccgagccggttcctgccgcaaaaccggctgcgggacaaggcaataccttcgtcatc
caagagcaccacgcccggcggctgcactacgacttccgactggagcgcgacggggtgctg
gtgtcctgggcggtgccgaagaacctgcccgacacccccgcggtgaatcacctagccgtg
cacaccgaggatcacccgctggaatacggcgggttcgagggcgtcatccccaaaggcgaa
tacggggcgggcagggtggtcatctgggactccggaacctatgacgccgagaagttccag
gacgacgaggtgatcgtcaacctgcacggccgcaagatctccgggcgctacgcgctgatc
cagacccagggcgaccaatggctggcgcaccggatgaaggaccagaacgtcttcgacttc
gacacgatcgccccgatgctcgccacccacggttcggcgtcggcgctcaaggcgagccag
tgggcgttcgagggcaaatgggacggctaccggctactggtcgaggtcgaccacggcacc
ctgcgggtgcggtcccggcgcggtcgcgaagtcaccggtgagtaccgcgaattatgctcg
ctggcaaaggctctcgaggataaccacgcggtgctcgacggcgaggccgtggtgctggac
aagcgcggcgtgcccaacttccacgagatgcagaaccgcggcaagggcgtgcgggtcgaa
ttctgggcgttcgacctgctctatctcgacggccgctcgctgctacgggcccgctaccgc
gaccggcgaaaactgttggaaatgctggcctccggcggtgctctgaccgttcccgagctg
ctgcccggcgatggtgaccaagcgctgcagcagtccgccgaactcggttgggagggcgtg
atcgccaagcggcgcgactccacctatcagctgggccggcgctcgtcctcctggatcaag
gacaagcattggaacacccaggaagtcgtgatcggcggctggaaggccggggaaggcgga
cgcagcagcggcatcggttccctgctgatgggtattccgggcccgggcggcctgcacttc
gccggccgcgtcggcaccgggttcaccgaacgcgacctggccaacttgaagaagatgctg
gctccgctgcgcaccgaccaaccgcccttcgatgcgccgcttccccgcagcgaggccaag
ggcgtcacgttcgtcgagccggtgctggtgggcgaggtgcgctacagcgagtggacaccg
gatgaccggctgcgccaatcgagttggcgcgggctgcggccggacaaggaagcaagcgag
gtggtacgagagtga
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