Marinobacter sp. LQ44: ASQ50_00390
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Entry
ASQ50_00390 CDS
T04470
Name
(GenBank) 3'-5' exonuclease
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
mlq
Marinobacter sp. LQ44
Brite
KEGG Orthology (KO) [BR:
mlq00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
mlq03016
]
ASQ50_00390
Enzymes [BR:
mlq01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
ASQ50_00390
Transfer RNA biogenesis [BR:
mlq03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
ASQ50_00390
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
RNAseD_HRDC_C
Motif
Other DBs
NCBI-ProteinID:
AMQ87261
UniProt:
A0A142FLA2
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All DBs
Position
87801..88952
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AA seq
383 aa
AA seq
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MTLSAPAVTVPPAPDTVRWIREPDTLDNWLDALEPGVPVVLDTEFERVSTFYPIPGLVQL
GGGGEFWLIDPDVAEASERFRAMLADSQRPKLLYAMSEDLELFRHWLDVMPKGVLDLQIG
AALAGAGFSVGYARLVETLFGETLDKSVTRSDWVARPLSPEQERYALDDIRFLQPVYEWV
CHGLRQRGLQQAMADESQRFADEAASLEDAGQHYLKLRGGWTLNREQQAVLQALVVWREQ
ECRRLDRPRNRVLNDGLLIAIAERCPGSLRALNDVQGVPGGIVKRYGEHLLELVRGAREA
DHTDLKPIPRPLTRDQQALFKKVKRCFRKVADDTDIPIELLAPRKRLEGVIEDGTMAGNP
FFEGWRREILAPVVPEIEELLAQ
NT seq
1152 nt
NT seq
+upstream
nt +downstream
nt
atgactctttccgcaccggccgttaccgttcccccggcccctgacactgttcgctggatt
cgcgagccagataccctggacaactggctggacgccctcgagcccggggtaccggtggtg
ctggacacagaatttgagcgggtatctactttctatcccattcccggtctggtgcagttg
ggtggcggcggtgagttctggctgattgatccggatgtagccgaggcctccgaacggttt
cgggcgatgctggcggatagccagcgaccaaagctgctatacgccatgagcgaagacctt
gagctgttccggcactggctggatgtgatgcctaaaggtgtgttggacctccagattggc
gcggcactggccggtgccgggttttccgtgggttatgcccgcctggtggaaaccctgttc
ggcgaaaccctggataaatctgttacccggtccgactgggtagccaggccattaagcccg
gaacaagagcgctatgccctggatgatattcggtttttgcaaccggtgtatgagtgggtc
tgccacggtttgcgccagcgcgggctgcagcaggctatggccgacgagtcacagcgcttt
gcggatgaagcggccagcctggaggacgccggacaacactacctgaaacttcgcggtggc
tggacactgaatcgggaacagcaggcggttctgcaagccctggtggtgtggcgggaacag
gagtgccggcggttggatcgcccccgaaaccgggtgttgaatgatggcttgctgatagcc
attgccgagcgctgccctggctcgctcagagccctgaatgatgtgcagggcgttccgggc
ggcattgtaaagcgttatggtgaacacctgctggaactggttcggggtgccagagaagcc
gaccacaccgatctgaagcccatacccaggccgctgacccgagatcagcaggcgctgttc
aagaaagttaagcgttgcttcagaaaagtggcagacgatactgatatacccattgaattg
ctggcgccaagaaaacgccttgaaggcgttattgaagatggcaccatggcaggtaatccg
ttttttgaaggctggcgccgagagatactggctccggtcgtcccggaaattgaggagctt
ctcgcacaatga
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