Marinobacter sp. LQ44: ASQ50_00480
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Entry
ASQ50_00480 CDS
T04470
Name
(GenBank) ATP-dependent helicase
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
mlq
Marinobacter sp. LQ44
Brite
KEGG Orthology (KO) [BR:
mlq00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mlq03019
]
ASQ50_00480
Enzymes [BR:
mlq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
ASQ50_00480
Messenger RNA biogenesis [BR:
mlq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
ASQ50_00480
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_19
HA2_N
AAA_22
nSTAND3
ResIII
NACHT
ABC_tran
AAA_30
AAA_23
DUF6162
SRP54
T2SSE
AAA_16
Motif
Other DBs
NCBI-ProteinID:
AMQ90845
UniProt:
A0A142FWI6
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All DBs
Position
105558..109421
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AA seq
1287 aa
AA seq
DB search
MMSQLDVCNQQEAARIIRRVGRTKGKPDQKDLEQMANWLEQGLEKVRQRQALHRSASFPP
GLPVSDRVDDISEAIRHHQVVIIAGETGSGKTTQIPKICLNHGRGVRGLIGHTQPRRIAA
RSVAARIAEELGEQVGQQIGYQVRFTDNTSEASRVKVMTDGILLAEIQHDRFLDRYDTLI
IDEAHERSLNIDFLLGYLKQLLPKRPDLKVIITSATIEVDRFSEFFDKAPVIEVSGRTYP
VDVRYRPLTGDEDDRDQGWTDGVLSAIEEIEQHERKEKQPPGDVLVFLPGEREIRALSKV
LRHAELRHTEVLPLYSRLSNQEQNRVFQAHKGRRLVLSTNVAETSLTVPGIRYVIDTGVA
RISRYSVRSKIQRLPIEPISQASANQRAGRCGRVAPGICFRLYDETDFLNRPEYTDPEIL
RTNLASVILQMATSGLGDIQNFPFLEAPDRRQVNDGYKLLEELGAVDDKRRVSRLGRTMA
RLPLDPRLARMLVTAAEQGSLSEVLIVIAGLSVQDPRERPQDKQQAADQAHAPFNDKESD
FATLLNIWNWFEEQRQEQSQNQLKRLCQKTFLSWMRMREWRDIHRQLTLICREQKLALNK
QPASYESMHKAILAGLLGHVAVKVEKREYLATRNRKVMIFPGSKVAKSGPKWIVAAEIVE
TSKVFARMVAAIQPEWVEPLAGHVVKHHFFEPHWEQKRAQVMGYEKVTLYGLDIVAKRRI
PYAKVDPEECRNLFIRRALVEGDYHSKAPFIARNREMLDTVENLEKKTRRRDLLVDDEVL
VAFYDQRLPKDIVSGRHFESWWKGLSADELRKLELTEADVLQRPLDQAAAEQYPDYLEWE
GVKYPLSYEFEPTSERDGVTLQVPLMALKQIPSRRLEWLVPGLLREKCIALVKGLPKSLR
RNFVPVPDFVDAALANMQPGNEPLALKLGDQLRRMTGVQIDPEAWREDELPRHLRMNLRV
TGDKGKVVAESRDTDDLQAKLEGRAEAALASATSDDDRSKAPKEFSDWQFGKMPEQVQTE
KGGMQVTVYPALEDLGKQVRSIRCLDRLTAEDTLRRGIARLIINRFGNTLADLERKLPRF
KQSALMFAPVGQAKVLLDDLLLSAVMQHFLPGTLPRDEESFVRVFDAHRGDFIPALEQAD
ERLYQAMAGYQKVAKQLKGKINLALAQSMADLKFQLQHLVYPGFLVATPSQWLERFGVYF
EAALIRLEKMPREMGREREFLHTIEPLWARYATKLEQQKRQGVQDPELELYRWMLEEYRV
SFFAQQLGTAMTVSAKRLDKQWQNTRV
NT seq
3864 nt
NT seq
+upstream
nt +downstream
nt
ttgatgagccagctggatgtctgcaaccagcaggaggcggcgcgcattatccgcagggtg
ggccgaaccaagggcaagccggaccagaaagacctggaacagatggcgaactggttggag
caggggcttgagaaggtgcgccagcgtcaggcgctgcaccgctccgcgagttttccgccg
ggactaccggtcagtgaccgggtggacgacatcagcgaggccatccgtcatcatcaggtg
gtgatcatcgccggcgaaaccggctccggtaaaaccacacagataccgaaaatctgcctg
aaccatggccgtggcgttcgtgggctgattggccacacccaaccgcgccggattgccgca
cgcagtgtcgccgcccgtatcgccgaagagcttggtgaacaggttggccagcagatcggt
taccaggtgcgctttaccgataacacctcggaggcgtcccgggtcaaggtcatgaccgat
ggtattctgctggcggaaatccagcacgatcgcttcctggatcgttatgacacgctgatt
atcgatgaggcccatgaacgaagcctgaatatcgatttcctgctcgggtacctcaagcaa
ctgttaccgaaacggccggatctgaaagtcatcattacctccgccaccattgaggttgat
cgcttcagcgagttcttcgataaagcaccggttattgaggtcagcggccgaacctatccg
gtagatgtgcgctaccggcccctgaccggcgatgaagacgaccgggaccagggctggacc
gacggtgtactgtcggccattgaggagatcgaacagcacgaacgcaaggagaagcagccc
ccaggagatgtgctggtgttcctgccgggtgagcgggaaatacgggccctcagtaaagtg
ctacggcatgcggagctgcgacacaccgaagtattgccgttatattcccggctcagtaac
caggaacagaaccgggtttttcaggcccataaaggccggcggcttgtgttgtccaccaac
gtggcggaaacctcgctgacggtacccggcattcgttacgtgatcgataccggggttgcg
cgaatcagccgttacagcgttcgctccaagattcagcgcttgccgatcgagccaatctcc
caggccagcgccaaccagcgggcgggccgttgcgggcgggtggcgccgggtatctgtttc
cggttgtatgatgaaaccgattttctcaaccgccccgagtataccgacccggaaatcctg
agaaccaatctggcctcggtcatcctgcaaatggctacctcgggcctgggcgacatccag
aatttcccgtttctggaagcgccggatcgccgccaggtgaacgatggctacaaactgctg
gaagagctgggtgctgttgacgacaaacgcagggtgagccgtcttggtcgcaccatggca
cgcctgccactggacccgcgcctggcccggatgctggtgacggcggcagagcagggcagc
ctgagcgaagtgctgattgtaattgccggcctcagcgttcaggacccgagagagcggccc
caggacaaacagcaggcagctgaccaggcccacgcaccgtttaacgacaaggaatcggac
tttgccaccttgttgaatatctggaactggtttgaggagcaacgccaggagcaatcccag
aaccagcttaaacggctttgccagaaaaccttcctgagctggatgcgaatgcgcgagtgg
cgggatattcaccggcaactgacgttaatctgccgggagcaaaagctggccctgaacaag
cagccggcaagctatgagtccatgcacaaggcgattcttgcgggtttgctgggccacgtt
gcggtcaaggtagagaaacgggagtacctggcaacccggaaccggaaagtgatgattttc
cctggttcaaaggtggccaagtccgggcccaagtggattgtggcggcggagattgttgaa
accagcaaagtattcgcgcgcatggttgctgctattcagccggaatgggttgagcccctg
gcaggccatgtcgtaaagcaccactttttcgaaccccactgggagcagaaacgagcccag
gtgatgggttacgagaaggtgactttgtatgggctggatattgtcgccaagcggcggatt
ccctacgccaaggtggacccggaggaatgccgtaatctgtttatccggcgagcgttggtg
gaaggcgattaccattcaaaagcgccgtttatcgcccgcaaccgggagatgctcgatacc
gtcgagaatctggaaaagaaaacccgccgtcgtgacctgttggtggatgacgaagtgctg
gtggccttttacgaccagcgcctgccaaaagacattgtcagtggccgccactttgaaagt
tggtggaagggcctgtctgccgacgaacttcgcaaactggagctgaccgaggccgatgtc
ttgcaacgcccgctggaccaggccgccgcggagcaatatccggattatctggagtgggaa
ggcgtcaagtacccgctcagttacgaattcgagcccaccagcgagcgggacggggtaacg
ttacaagtgcccctcatggcgctcaagcagattccctctcgccggctggagtggctggtg
ccgggactgttgcgggaaaaatgcatcgccctggtgaaagggttgcccaaatccctgcgc
cgaaactttgttccggttccggatttcgtggatgcggccctggccaacatgcagcctggc
aacgaacccctggccctgaagctgggggatcaactgcgccggatgacgggtgtacagatt
gatccggaagcctggcgggaggacgaactgcctcggcacctgcggatgaaccttcgggta
accggagacaaaggcaaagtggtggcagagagccgggataccgacgatttgcaggccaag
ctggagggccgggcggaagcggcgctggcctcggctaccagcgatgatgatcgttcaaaa
gcaccgaaagaattcagtgactggcagttcggcaagatgccagagcaggtgcagactgaa
aaaggcggtatgcaggtaacggtctatcccgcccttgaggacctgggcaagcaggtgcgg
tccattcgctgcctggaccggttaaccgctgaggacaccctgcgccggggtattgcccgg
ctgatcatcaaccggtttggcaacaccctcgcggaccttgagcgcaagctgccccggttc
aaacagtccgcgctgatgtttgccccggtggggcaggcgaaagtgctactggacgatctg
ttgttgtctgcggtgatgcaacacttcctgcccggaaccctgcccagagacgaagaaagc
tttgtcagggtattcgatgcccaccgcggggattttattccggcgttggagcaggccgac
gaacgcctttatcaggctatggccggttaccagaaagtggccaaacagctcaagggcaaa
attaacctggcgctggcgcagagtatggcagatctgaaattccagcttcagcacctggtc
tatccgggcttcctggtggccacgccatcccagtggctggaacgcttcggggtgtatttc
gaggcagccttgattcgcctggaaaaaatgcccagggagatgggccgcgagcgcgaattc
ctgcacaccattgagccactgtgggcccgctacgccaccaagctggaacagcagaaacgc
cagggcgtgcaggaccctgaactggagctgtaccgctggatgctggaagaataccgggtc
tcattctttgcccaacaactgggcacggcgatgaccgtatcggccaagcgacttgacaaa
cagtggcagaatacacgggtgtag
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