Marinobacter sp. LQ44: ASQ50_01205
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Entry
ASQ50_01205 CDS
T04470
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
mlq
Marinobacter sp. LQ44
Pathway
mlq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mlq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ASQ50_01205
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mlq03019
]
ASQ50_01205
03400 DNA repair and recombination proteins [BR:
mlq03400
]
ASQ50_01205
Enzymes [BR:
mlq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
ASQ50_01205
Messenger RNA biogenesis [BR:
mlq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
ASQ50_01205
DNA repair and recombination proteins [BR:
mlq03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
ASQ50_01205
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
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Motif
Pfam:
RQC
DEAD
HRDC
RecQ_Zn_bind
Helicase_C
Motif
Other DBs
NCBI-ProteinID:
AMQ87418
UniProt:
A0A142FLQ9
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Position
complement(257547..259418)
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AA seq
623 aa
AA seq
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MYPDQDFEQLTREPPSSANRSPEQVLHEVFGYESFRLLQGEIVQEVVNGGDALVLMPTGG
GKSLCYQVPALVRPGTAIVISPLIALMQDQVAALRELGVRAAFLNSTMDYEHARATEYAL
MTGELDLLYCAPERLIQPRTIDLLHNASLSLFAIDEAHCVSQWGHDFRSDYLQLSMLARE
FPGIPRIALTATADERTRKEIAERLSLTNARHFVSGFDRPNIQYRITPKTNANKQLLDFI
KAEHEGDCGIVYCLSRNKVDATARMLADKGYTALPYHAGLDATARARHQERFLREDGVVI
VATIAFGMGIDKPDVRFVAHLDLPKSLEAYYQETGRAGRDGKPSTAWMVYGLQDVIKLRQ
MLEASQGNDQFKRVERQKLDAMLGLCEVTRCRRQVLLRYFGDELEQPCGNCDTCLTPPET
WDGTVAVQKALSCVYRTGQRFGVNYLIDVLRGSENERILQSGHQAISTYGIGTELTANEW
KSVFRQLVANGYLRADPEGYGALQLTEQCRPLLKGEQAIELRKDPVAKKTSSARIAGKRA
GPAIREQITDQAGWDALRACRKELADKQGVPPYVIFHDTTLFDMLERRPETLEQLAEVSG
VGAAKLEKYGEVFLQTLREIAQS
NT seq
1872 nt
NT seq
+upstream
nt +downstream
nt
atgtatccggaccaggacttcgagcaactgacccgcgaaccgccttcctccgctaaccgc
agcccggagcaggtactgcatgaggttttcgggtatgagagtttccgcctgctacagggt
gaaatcgttcaggaagtcgtgaatggcggcgatgccctggttctgatgcccaccggcggt
ggtaaatcgctctgttaccaggtgcccgcgctggtccgccccggcacggccattgttatt
tcgcccctgatcgcactgatgcaggatcaggtggctgcgttgcgggaactcggtgtgaga
gcggcattcctcaactccaccatggattatgagcatgcccgagcaaccgaatacgcattg
atgaccggcgagcttgatctgctctactgcgccccggaaaggctgatacagccgcgcacc
atcgacctgctgcacaacgcgtcgttatcgttatttgccattgacgaagcccactgtgta
tcccagtggggccatgacttccgttccgactatcttcagttaagcatgctcgcccgggag
tttccgggtatcccaagaattgcactcactgcaacggcggatgaacgaacccgcaaagag
attgccgagcgcctgtccctgaccaatgcccggcactttgtcagtggctttgatcgcccg
aacattcagtatcgaatcacaccaaaaacaaatgcaaacaagcagttgttggattttatt
aaagcagaacatgaaggtgattgcgggattgtctattgcctgtcccgcaacaaagtagac
gccaccgccaggatgctggcggacaaaggctacaccgccctgccttaccatgcggggctg
gatgccacagcccgggcccgccatcaggaacggttcctgcgcgaagacggcgtggtcatc
gtggcgaccattgctttcgggatgggcattgataaaccagacgttcggtttgtggcccat
ctggacttacccaaaagcctggaggcctattaccaggaaacgggccgtgcaggccgggac
ggtaagccgtccaccgcctggatggtttacggcctgcaggatgtcattaagttgagacag
atgcttgaggcatcgcagggcaacgaccagtttaaacgggtagaacgccagaagctcgat
gccatgcttggcctctgcgaagtgacccgctgccgccgccaggtactgttgcgttatttt
ggtgatgaactggagcagccctgtggtaattgcgatacctgcctcacgccccctgagacc
tgggatggcacggtggccgtgcaaaaggcgctgtcctgcgtgtatcgtaccgggcagcgt
tttggcgttaactacctgattgacgtgctgcgtggctccgagaacgaacgtattcttcaa
tctggccatcaggccatttccacctacggtattggtaccgaactcaccgctaacgagtgg
aaatcggtgttccgccagctggttgccaacggctacctgcgggcagatccggagggctat
ggtgccttacagctgacggagcagtgtcgcccgctgctgaagggtgaacaggctatcgag
ttgcgcaaagacccggtggccaaaaaaacctcttcggccagaattgctggcaaacgtgcg
ggcccggcaatacgggagcaaattaccgaccaggccggttgggatgcgttacgggcgtgc
cggaaggaactggcagacaaacagggcgtgccgccttacgtgattttccacgacaccacc
ctgttcgatatgctggaacgtcgcccggaaaccctggagcaactggcagaggtcagcggc
gtaggggccgccaagttggagaaatatggcgaggtcttcctgcaaaccctgcgggaaatt
gctcagtcctga
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