Marinobacter sp. LQ44: ASQ50_14280
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Entry
ASQ50_14280 CDS
T04470
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
mlq
Marinobacter sp. LQ44
Pathway
mlq02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
mlq00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
ASQ50_14280
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mlq03021
]
ASQ50_14280
Transcription machinery [BR:
mlq03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
ASQ50_14280
BRITE hierarchy
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Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r1_1
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
RRN3
Motif
Other DBs
NCBI-ProteinID:
AMQ89772
LinkDB
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Position
complement(3123740..3125587)
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AA seq
615 aa
AA seq
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MSGNSQKSRLKDLIARGKEQGYLTYAEVNDHLPEDIADPDQVEDIIRMINDMGIQVCEET
PDADTLLMTEGDSTADEAAAAEAAAALAAVETDAGRTTDPVRMYMREMGTVELLTREGEI
VIAKRIEEGIRDVMAAVAHFPGTAGTVIQAYDRIIENEGRISDIVTGFLDPDDAEPFMGE
DTSEDTSADDSDSSDDDDDTSTEEETDNGPDPEETRLRFELLKEKLDAADKALAKHGRSH
KKTQEALNELGQVFAPFKLGNKAFDELVNVVRSTNDLVRENERAIMQICVRDCKMPRKDF
IKWFPGNETDLEWAKEIAATKKPYAAAIGERIDEIVRLQKRIQNVQTEVDLDVVDIKEIN
RRVSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYR
RGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEE
LGERMDMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDIQALSPVDSATAEGLRE
ATRSVLAGLTARESKVLRMRFGIEMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPS
RSDHLRGFIDDQGNG
NT seq
1848 nt
NT seq
+upstream
nt +downstream
nt
atgtcaggcaattcgcagaaatcacgtttgaaagacctcatcgcacgaggcaaggaacaa
ggttacctgacttacgccgaggtaaacgaccacctaccggaagatatcgcagatccggat
caggttgaagacattatccggatgatcaacgacatgggtatccaggtgtgcgaagaaaca
cccgacgccgataccctgttgatgaccgaaggcgactccaccgccgacgaagccgccgct
gctgaagccgccgccgctctcgccgccgtagaaaccgatgccggccgcaccaccgacccc
gtacgcatgtacatgcgtgaaatgggtaccgttgaactgctgacccgcgaaggcgaaatc
gtcatcgccaagcgcattgaggaaggcattcgcgacgtcatggcggccgtagcccacttc
cccggcaccgccggcaccgtgattcaggcttacgatcgcatcatcgagaacgaaggccgc
atcagcgacatcgttaccggcttcctggacccggacgacgccgagccgttcatgggcgaa
gacaccagtgaagacacctctgctgacgacagcgacagcagcgatgatgacgacgacact
tcaaccgaggaagaaaccgataacggtccggacccggaagaaacccgcctgcgttttgag
ttgctgaaagaaaaactggatgccgccgacaaagccctggccaagcacggccgcagccac
aagaaaacccaggaagccctgaacgaactgggccaggtgtttgcaccattcaagctgggc
aacaaggcgtttgacgaactggtgaacgtggttcgctccaccaacgatctggtgcgggag
aacgaacgggccatcatgcagatctgcgtacgcgactgcaaaatgccgcgcaaagatttc
atcaaatggttcccgggcaacgagaccgacctggaatgggcgaaagaaatcgcggccacc
aagaagccatacgccgccgccattggtgaacgcatcgacgagatcgtgcgcctgcagaag
cgcatccagaacgtccagaccgaagtggatctggacgtagtcgacatcaaggaaatcaac
cgtcgggtgtccatcggcgaagccaaggcccgccgcgccaagaaagaaatggtcgaggct
aacctgcgactggtaatttccatcgccaagaaatacaccaaccgtggcctgcagttcctg
gacctgattcaggaaggcaacatcggcctgatgaaggccgtggacaagtttgaataccgt
cgcggctataagttctctacctatgccacctggtggattcgccaggccattacccgctcc
atcgcggaccaggcccgtaccatccggattccggtgcatatgattgagaccatcaacaag
ctcaaccgtatctcccgccagatgctgcaggaaatgggccgcgagcccacgccggaagag
ctgggcgagcgcatggacatgccggaagacaagatccgcaaggtactgaagatcgccaaa
gagccgatctccatggaaaccccgattggcgacgatgaagacagccatctgggcgatttc
atcgaagatatccaggccctgtcgccggtggattccgccactgccgaaggcctgcgcgag
gcgacccgctcggtgctggccgggctgaccgctcgcgaatccaaagtcttgcgcatgcgc
tttggtattgaaatgaacaccgaccacaccctggaagaagtcggcaaacagttcgacgta
acccgggagcgtatccgtcagatcgaagccaaggccctgcgcaaactgcgccacccttcc
cgctccgatcacctgcgcggctttattgacgaccagggcaacggttaa
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