Marinobacter sp. LQ44: ASQ50_19145
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Entry
ASQ50_19145 CDS
T04470
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
mlq
Marinobacter sp. LQ44
Pathway
mlq03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mlq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
ASQ50_19145
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mlq03400
]
ASQ50_19145
Enzymes [BR:
mlq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
ASQ50_19145
DNA repair and recombination proteins [BR:
mlq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
ASQ50_19145
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
SNF2-rel_dom
UB2H
ERCC3_RAD25_C
SecA_DEAD
AAA_30
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
AMQ90634
UniProt:
A0A142FVX5
LinkDB
All DBs
Position
complement(4183984..4187517)
Genome browser
AA seq
1177 aa
AA seq
DB search
MPQGSARAASPAPLIAPTLPDKSADHRKWGQLHGCSDALAICESAKLHKGLTLVVTRNTD
EAIRLEQAIRFFLNLPPEEDGATVTADGLELLSLPDWETLPYDLFSPHQDITSRRIRTLH
RLPSTRHGVLVVPARTLMHRLAPPSYLQGNTLLLKVGQSLDIDSWRMQLEAAGYHHAENV
YEHGEYAVRGAILDIYPMGSNLPYRIDLFDDEIETLRTFDPETQRSIDRIDQIELLPAHE
FPWHKEARSGFRNRWFEHFPHADKDAPVYQDVSNGITPPGIEYYLPLFFDQTATLFDYLP
ATTLVFTADGLNDAVTAFDAETRARHEDRRHDRLRPILPPAELFLLQDEVFGQIKRYPRI
TCTPNAMDGAGTANCGATPLPDVAMDGRAADPAGRLKRFIKEFPGRVLICAESSGRREAL
IENLRDHKLKPVTVSGWQDFSESDSATLAITIAPMEQGMVLPEQNLALITETALFGERVL
QRRRREKPTEVDDHGYRDLSELRIGSPVVHIDHGVGRYKGLETISAGGQADEFLTLEYAG
GSKLYVPVSSLHLISRYAGTDEEHAPLHKLGTDRWSTAKQKALEKIRDTAAELLDVYARR
EARKGFQFEDPKEAYRAFAAGFPFEETPDQQVAIQAVFEDMTGERPMDRLVCGDVGFGKT
EVAMRAAFLATWSGKQVAVLVPTTLLAQQHYESFRDRFSDTPVTVELLSRFRSGSQTSKA
MTAIEEGKADIVIGTHKLLQGDVKFKNLGLVIIDEEHRFGVQQKERLKSLRAEVDMLTLT
ATPIPRTLNMAMGHLRDLSIIATPPARRLSVKTFVRQREEAMVKEAILREVLRGGQVYFL
HNDVSTIEKTAEDLRRLIPEARVGVAHGQMRERQLEQIMSDFYHKRFNVLVCTTIVETGI
DIPSANTIIIERADKFGLAQLHQLRGRVGRSHHQAYAYLLTPPPKSISNDAKKRLDAIAE
AQDLGAGFMLATHDLEIRGAGELLGEEQSGQIESIGFTLYMQLLDEAVKAIREGRTPNAE
LPLSHGTEMNLRIPALIPDDYLPDVHNRLMLYKRIASVQSEDELKELQVEMIDRFGLLPE
PARNLINQTRLRLKAEALGIGKVDAGKEWVRLEFGATTPVDPLVLVKKVQSAPDTYRLEG
ANSFRFRLNDDSTSGKLDAIAAMLTELTPGHKPAKAS
NT seq
3534 nt
NT seq
+upstream
nt +downstream
nt
atgccccaaggttccgcccgtgcggcctcacccgccccgttgattgccccgacgctgccg
gataaaagcgccgaccaccgcaaatggggccagcttcacggttgcagtgacgccctggcc
atctgcgagagcgccaagctgcacaaaggactgacgctggtggttacccgaaacaccgat
gaggccatccgcctggagcaggccatccggtttttcctgaacctgccaccggaagaagac
ggcgctacggtgaccgcagacggccttgagctgttgtcgctgccggactgggaaaccctg
ccctacgacctgttttcaccccatcaggacattacttcccggcgcatccgcaccctgcac
cgattgccatccacacgccacggtgttctggtggtgccggctcgcaccctgatgcatcgg
ctggcgccgccaagttacctgcaaggcaacaccctgctattaaaagtaggccagagtctg
gatatcgacagctggcgcatgcaactggaggctgcgggatatcaccacgctgaaaatgtg
tatgagcacggtgaatatgccgtgcgcggggcgattctggacatctaccccatgggctcc
aacctgccctaccggattgacctgtttgatgacgagatcgaaaccctgcggacctttgat
ccggaaacccagcgctccatcgatcgcatagaccagatcgaactgctgcctgcacatgaa
ttcccctggcacaaggaggcccgctccggcttccgcaatcgttggtttgagcatttcccc
catgccgacaaagacgctccggtctatcaggacgtcagcaacggtattaccccgccaggc
atcgagtattacctgccattgttctttgaccagaccgccacgctgttcgattacctgccg
gccaccacactggtgtttaccgcagacggcctgaacgacgctgtcacggctttcgatgcg
gaaacccgcgccaggcacgaggaccgccggcacgaccggctgcgaccgattctgccgccc
gccgagcttttcctgctacaggacgaagtgtttggccagatcaagcgatacccgcgcatc
acctgcacccccaatgccatggacggcgcagggactgccaattgcggcgccacaccgtta
cctgacgtggccatggacggccgggccgcggacccggctgggcgactcaaacgctttatc
aaggaattcccgggccgcgtgctgatttgcgccgaatcttccggtcggcgcgaagccctg
atcgagaacctgcgggatcacaagctaaagcctgtcaccgtcagcggctggcaggatttt
agcgagagcgatagtgctaccctggccatcaccattgcgccgatggaacagggaatggtg
ctaccggagcagaacctcgccctgattactgaaaccgccctgttcggcgaacgggttctg
cagcggcgccggcgcgaaaagcctacggaagtggacgaccacggttaccgggacctgtcc
gaactgcgtatcggctcgccggtggtgcatattgaccacggagttggccgttacaaaggc
ctggaaaccatcagcgccggcggccaggccgatgagttcctgacgctggaatacgccggt
ggctcgaaactctatgttcccgtgtctagcctgcacctgatttcccgttacgccggtacc
gatgaagaacacgcacccttgcacaaactgggcaccgaccgctggagcaccgccaagcag
aaagctctggagaagattcgcgacaccgccgccgagctgctagacgtgtacgcccgccga
gaagcccgaaagggcttccagtttgaagacccgaaagaggcctaccgggcgttcgccgct
ggcttcccgtttgaggaaacgccggaccagcaagtagccattcaggcggtgttcgaggac
atgaccggcgaacgccccatggaccgcctggtgtgcggcgatgtgggcttcggtaaaacc
gaggtagccatgcgagcggccttcctggccacctggtccggcaagcaggtggccgtgctg
gtgcccaccaccctgctcgcccagcagcattacgaatccttccgggatcgtttttccgac
accccggtcaccgtggaactgcttagccgttttcgcagtggcagccagaccagcaaggcc
atgacagccattgaggaaggcaaggcggacatcgtgatcggcacccacaaattgctgcag
ggcgatgtgaagttcaagaacttgggcctggtcattattgatgaggagcatcggttcggt
gttcagcagaaagaacgactgaaatccctgcgggcagaggtggatatgctcacgctgacc
gccacgccgattccgagaaccctgaacatggccatgggccacctcagggacctgtcgatc
atcgccaccccgccggcccgccggttgtcggtcaaaacctttgtgcgccagcgcgaagag
gccatggtgaaagaagccatcctgcgggaagtcctgcgtggcggtcaggtgtattttctg
cacaacgacgtgtcgaccatagaaaaaacggccgaggatctgcgcagactgattccggag
gcccgggtgggcgtcgctcacggccagatgcgcgaacggcagctggaacagatcatgtcg
gacttttaccacaagcgcttcaacgtgctggtgtgtaccaccatcgtggaaaccggcatc
gacattcccagcgccaacaccatcatcatcgagagagccgacaagtttggcctggcccag
ttgcaccaattgcgcggccgggttggccggtcgcaccaccaggcctatgcctacctgctg
acgccgccaccgaaaagcatctccaacgatgccaagaaacgcctggacgccatcgccgaa
gctcaggacctgggcgccggcttcatgctggccacccacgacctggaaatccggggcgcc
ggtgagctgctgggggaggaacagagcgggcaaattgaaagcattggcttcaccctgtac
atgcagctgctcgatgaagcggtaaaagccattcgcgagggccgcaccccgaatgcggaa
ctgcctttgagccacggtaccgaaatgaacctgcgtatccctgccctgattcccgacgac
tacctgcccgatgtgcacaaccgcctgatgctgtacaagcgcattgccagcgtccagagc
gaagatgaattaaaagaacttcaggttgagatgatcgaccgcttcggattattaccggaa
ccggccagaaatctgatcaaccagacccggctgcgtttgaaagccgaagccctgggcata
ggaaaagtggacgctggcaaggagtgggtgcgactggagtttggcgcgaccacaccagta
gaccctctggtactggttaaaaaagtgcaatccgcaccggacacctatcgactggaaggc
gccaacagcttccgcttccggctgaatgatgactcaaccagtggtaaactcgacgccatt
gcagccatgctcacggaattgacgccgggccacaagccagccaaggcgtcgtga
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