Marinobacter sp. LQ44: ASQ50_19490
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Entry
ASQ50_19490 CDS
T04470
Name
(GenBank) ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
mlq
Marinobacter sp. LQ44
Pathway
mlq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mlq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ASQ50_19490
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mlq03019
]
ASQ50_19490
03009 Ribosome biogenesis [BR:
mlq03009
]
ASQ50_19490
Enzymes [BR:
mlq01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
ASQ50_19490
Messenger RNA biogenesis [BR:
mlq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
ASQ50_19490
Ribosome biogenesis [BR:
mlq03009
]
Prokaryotic type
rRNA processing factors
ASQ50_19490
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
AMQ90699
UniProt:
A0A142FW40
LinkDB
All DBs
Position
complement(4255761..4258883)
Genome browser
AA seq
1040 aa
AA seq
DB search
MKRMLINATHPEELRVALVDGQRLFDLDIESSTREQKKANIYKGRITRVEPSLEAAFVDF
GAERHGFLPLKEISKEYFKKSPGQIEGKINIKDVLSEGQEVIVQVDKEERGNKGAALTTF
ISLAGRYLVLMPNNPRAGGISRRIEGDDRAQLKDAMNGVQVPKSMGIIVRTAGIGRTTEE
LQWDLDYLVQFWEAITQAAGERKAPFLIHQESNVIIRAVRDYLRQDIGEVLIDADGVYED
VLSFVRAVMPTFENKIKLYKDEIPLFSRYQIEGQIETAFQREVKLPSGGSIVIDPTEALV
SIDINSSRATKGHDIEETALQTNLEAAEEIARQLRLRDMGGLIVIDFIDMTPAKHQREVE
QKMREALEIDRARVQVGKISRFGLLEMSRQRLRPSLGETRSEVCPRCEGQGTIRGIESLA
LSIMRLIYEESSKEKTAEVRAIVPVSVATFLLNEKRKQLADIEARQGVSVVVAPVPNMET
PHFEIIRLRQDEATPEHIASHQVAQEYNEREEESAEVQTTEKPVREQAAVKAIRPTAPAP
TAPQAAAEPAEPEEGLFRKLGKKIACFFRGEQEQADAKQAAGNRDRAGERRNQGRQDRRK
SRVARDDQRQGGNRTGNDRRQGGQPNRADDNRNRNRGNRNDDQSRNAQNRSGQQDKVGEN
RGADNKGGENRRDNRKDSQGRNQNRNRPQRDAKDQKDNREPQDAQKTPAETKQGDDKRRK
PRRQRNRDGSPAESPASTPAARKAERSERHQKDTQPEKGVETGHEEAKQQPGQQPVEQPK
KVEAPKNAAAEDKATVETPKAEKPEQPKADTAPEEKAEKPAQPAKQGSPTDSQKASDTTD
AKADNAQPADAPESGNAEKDKEPREPRKARPANRQRKPKAADKAADSGKAEAPATRADSE
EKAAEPTDKPDAMPKSEDKPAEASEAPKAESKVTDSETADTPKPVKAKQTEIAEKPASEE
PKAQPEAPEPKAEADKAKPEAEAKTNSEPKAEVEVDDARTAPAQDEMPDVPVTPGRAYND
PREVRKRQRAAAEAKKAGSN
NT seq
3123 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgctgatcaatgcaactcaccctgaagagttgcgcgtagctctggtagac
ggccaacggctttttgacctggatatcgaatccagcacccgtgaacagaaaaaagccaac
atctacaaaggccgtatcactcgcgtagaacccagccttgaagcggcgttcgtcgacttt
ggcgcagagcgccacggcttcctcccgctgaaagaaatctcgaaagagtacttcaagaag
tctcccggccagatcgaaggcaagatcaacatcaaggatgttctgtctgaagggcaggaa
gtcatcgtgcaggttgataaagaagagcgtggcaacaagggcgcagccctgaccaccttt
atctccctcgccggtcgctacttggtactgatgcccaacaatccccgcgccggtggcatt
tcccgccgcatcgagggcgatgaccgggcacagctgaaagacgccatgaacggcgtacaa
gtgccgaagtccatgggcatcatcgtacgcaccgccggtattggccgtaccaccgaagaa
ctccagtgggaccttgattacctggtgcagttctgggaagccattacccaggccgctggc
gagcgcaaggcgcccttcctgattcaccaggaaagcaacgttattatccgggccgttcgt
gactacctccgccaggacatcggcgaagtcctgatcgacgctgacggcgtttatgaagac
gttctcagctttgtgcgcgccgtgatgcccacctttgagaacaagatcaagctgtacaaa
gatgagatccccctgttcagccggtaccagatcgaaggccagatcgaaaccgcgttccag
cgggaagtgaagctgccttccggcggctccattgtgatcgaccccaccgaagcactggtc
tccattgacatcaactcctcccgggccaccaaaggtcacgatatcgaggaaactgccctg
cagaccaacctggaagcggcagaagaaatcgcccgccagctgcgcctgcgggacatgggc
gggttgatcgttatcgatttcatcgacatgacacccgctaagcaccagcgcgaagtcgag
cagaaaatgcgtgaagccctggaaatcgaccgggcccgcgttcaggtaggcaagatttcc
cgcttcggcctgctggagatgtcacgtcagcgcctgcgcccctccctgggtgaaacccgc
agtgaggtgtgcccgcgctgtgaaggccagggtaccatccggggcattgaatccctggcc
ctgagcatcatgcgactgatctacgaagaatcgtccaaggaaaagaccgccgaagtccga
gccatcgtaccggtgtccgtagctaccttcctgctgaacgaaaaacgcaagcagctggcc
gacatcgaggcacgccagggcgtttccgtggtggttgctccggtgcccaacatggaaaca
ccgcacttcgagatcatccgcctgcgtcaggacgaagcaacccctgagcacattgccagc
caccaggttgctcaggaatacaacgagcgggaagaagaaagcgccgaagtacagaccact
gaaaagccggttcgtgaacaggctgccgtaaaggccatccgccccacagccccggccccg
acagcacctcaggccgccgctgaaccagcagagccggaggaaggtctgttccgcaagctc
ggcaagaagattgcctgtttcttccgcggcgagcaggagcaagccgacgccaaacaagcc
gccggcaaccgtgaccgcgccggagagcgtcgtaaccagggccgccaggaccgtcgtaaa
tcacgggtagcccgcgacgaccagcgccagggtggcaatcgcaccggaaacgaccgccgt
cagggtggccaaccaaaccgcgctgatgacaaccgcaaccgtaatcgcggcaaccgcaac
gatgaccagtcccgcaatgcccagaatcgctcagggcagcaggacaaggttggcgagaac
cgtggtgctgacaacaaaggcggcgagaaccgtcgggataaccgcaaggattcgcagggt
cgcaaccagaaccgcaaccgtccgcagcgcgatgcgaaagaccagaaagacaaccgcgag
ccgcaggatgcccagaagacgccggccgagaccaagcaaggcgacgacaagcgtcgtaag
ccgcgccgccagcgtaatcgcgacggctcacctgccgagtctccggccagcacaccggcc
gcacgcaaggcagagcgcagcgaaaggcaccagaaggatactcagcccgagaaaggcgta
gagaccggtcacgaagaggcgaagcaacagccaggccagcaaccggttgaacagcccaag
aaggttgaagcgccgaagaacgctgccgcagaagacaaggccacggtggagacacccaag
gctgaaaagcctgaacagccaaaagccgacacggcgccagaagaaaaggctgagaaaccg
gcacagcctgctaagcaaggcagcccgactgacagccagaaagcgagcgacactaccgac
gccaaggctgacaacgctcagccggctgacgctcctgaatcgggtaacgccgagaaggat
aaagagcccagggaacctcgtaaggctcgcccggcaaaccgtcagcgcaaaccgaaagcc
gcagacaaggctgccgatagcggcaaggctgaagcgccggccaccagggccgacagcgaa
gaaaaagcagcagagccgactgacaagccggatgcaatgccgaagtccgaggataagcct
gccgaagcgtcagaagctccaaaggccgaaagcaaagtaacagacagtgaaacggcggat
accccaaagccggtaaaggcaaaacagactgaaattgccgagaagcctgcgagtgaagag
ccaaaagcccagccagaggcccctgagcctaaggccgaggctgacaaggcaaaaccggaa
gccgaggcaaagactaactcagagcccaaggcagaagtagaagtcgatgatgcgcggact
gctccggcacaggacgaaatgccagacgttccggtcactccgggccgcgcttacaacgac
ccacgcgaggtccgcaaacgccagcgtgcggccgccgaagccaaaaaggccgggagtaac
tga
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