Melampsora larici-populina: MELLADRAFT_111500
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Entry
MELLADRAFT_111500 CDS
T03138
Name
(RefSeq) hypothetical protein
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
mlr
Melampsora larici-populina
Pathway
mlr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mlr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MELLADRAFT_111500
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mlr03019
]
MELLADRAFT_111500
03041 Spliceosome [BR:
mlr03041
]
MELLADRAFT_111500
03009 Ribosome biogenesis [BR:
mlr03009
]
MELLADRAFT_111500
03016 Transfer RNA biogenesis [BR:
mlr03016
]
MELLADRAFT_111500
Enzymes [BR:
mlr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
MELLADRAFT_111500
Messenger RNA biogenesis [BR:
mlr03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
MELLADRAFT_111500
Spliceosome [BR:
mlr03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
MELLADRAFT_111500
Complex C
U4/U6.U5 tri-SnRNP related factors
MELLADRAFT_111500
Ribosome biogenesis [BR:
mlr03009
]
Eukaryotic type
Pre-60S particles
Helicases
MELLADRAFT_111500
Transfer RNA biogenesis [BR:
mlr03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
MELLADRAFT_111500
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
ResIII
nSTAND3
Motif
Other DBs
NCBI-GeneID:
18924398
NCBI-ProteinID:
XP_007415929
JGI:
Mellp1_111500
UniProt:
F4S3D7
LinkDB
All DBs
Position
Unknown
AA seq
1026 aa
AA seq
DB search
MPKSRIPSPSSSSEATSPKRTRHISPNRDPKPVVVADTFETEASRQVKATAGLLPQQDIA
EGEQVTLSHQVRHQVAIPPTYPYVPISAHKPPINPARSYPFTLDPFQKVSISSIERNESV
LVSAHTSAGKTVVAEYAIAQCLANKQRVIYTSPIKALSNQKYREMTAEFGDVGLMTGDVT
INPSASCLVMTTEILRSMLYRGSEIMREVAWVIFDEIHYMRDKERGVVWEETIILLPHTV
RYVFLSATIPNAMQFAEWICKTHDQPCHVVYTDFRPTPLQHYLFPAGGDGIHLVVDEKSV
FREDNFMKAMGSLKDSKGEDPASANSGRNKQGKTKKGGTKGPSDIYKIVKMIMVKNYNPV
IVFAFSKRECEALALQMSKLEFNSTEEKDTVETVFNNAISGLSEDDQSLPQIAHILPLLK
RGIGIHHGGLLPILKEVIEILFQEGLIKVLFATETFSIGLNMPAKTVVFTTVRKFDGKDF
RSLSSGEYIQMSGRAGRRGLDDRGIVIMMCDEQLEPTVARNMVKGEADRLDSAFHLGYNM
ILNLMRVEGVSPEYMLERCFYQFQSSDQLPVLENEIRGLQAARAEITVPHESLVKEYYDI
RHELNIQNQDLREVINHPTYSLPFLQPGRLVRVKFGEIDYDWGCVVNFQKRLGDRGKPLG
PDVPAQQTFIVDVLLHIASAQEVQKGKGTLGGSSNFVKPCPEGDAGEFAVVPVLLSTLDG
ISRIRIFLPKDLKPLESRQTALKAVKEVKRRFPEGIALLDPVENMGIQDEEFHKLLKRIE
TLESSLKNHKLIKEDKLSEWYELYSKKEQISNSIKLIRHKISDTHNVIYMEDLKNRKKAL
RRLGFSNKDDVVEIKGRVACEISSGDELLLTEMIFNGAFSELTPEQCAALLSCFVFTEKS
EQITKLKAELEGPMKKMKEAATKIAHEIKEAHIAIDEVEYVNSFKTEMMDAVYNWCKGST
FAEICKMTDIFEGSLIRCFRRLQELIRQMSMAAKAIGNVELEEKFNQSLEKLERPLSVVF
NPSLYL
NT seq
3081 nt
NT seq
+upstream
nt +downstream
nt
atgccgaaatctagaatcccttcaccctcttcgtcatctgaagcaacaagtcctaaacga
accagacatatctcaccaaatcgagatcccaaaccagtagtagtagctgatacatttgaa
accgaagcatctcgtcaagtcaaagcaacagctggattacttccacaacaagatatagct
gaaggagaacaagtcactttatcacatcaagtccgacatcaagttgctattccacccacc
tatccttacgtacctatctcagctcataaaccacctatcaatccagctagaagttatcct
tttacacttgatccatttcaaaaagtatcgatctcttcaatcgaaaggaatgaaagtgtt
ttggtttcagctcatacaagtgctggtaaaactgtagtggccgaatatgcaattgctcaa
tgtttggccaataaacaaagagtgatctatacttctcctatcaaggcactcagtaatcaa
aaataccgtgaaatgaccgccgagtttggtgatgtgggattgatgacaggtgatgtcaca
atcaatccgagtgcttcctgtttggtgatgacaactgagattttacggtctatgttatat
cgaggttctgagatcatgcgagaggttgcatgggtgatctttgatgagattcactatatg
cgagataaggaacgaggtgtggtgtgggaagaaaccatcattctattacctcacaccgtg
cgctacgtctttctttcagccacgattcccaacgcgatgcaatttgcagaatggatatgt
aaaacacacgatcaaccgtgccatgtggtctataccgatttcagacctactccactacaa
cattatctttttcctgcaggtggtgatggaattcatttagtagtggatgagaagagtgtt
tttcgtgaagataactttatgaaagctatgggctcactgaaggattcaaaaggagaagat
ccggctagtgctaattcaggtcgaaacaaacaaggcaaaactaaaaaaggtggtaccaag
ggtccttctgatatttataaaatcgtgaagatgatcatggtaaagaactataacccggta
atcgtttttgctttctccaaacgtgaatgcgaggcactggctttacaaatgtcgaaactt
gaattcaactcaacagaagaaaaggatactgtcgaaacggttttcaataatgcgatttca
ggtctttctgaggacgaccaatctttacctcagatcgctcatattcttccactcttaaag
agaggtattggtattcatcatggtggtttactacctatcttgaaagaagtcattgagatt
ttgttccaagaaggtttgatcaaggttctatttgcaactgagactttctctatcggactt
aatatgccagccaagactgtagttttcacaacggtacgaaagtttgatggtaaagatttt
cgaagtttaagttcaggagaatatattcaaatgtcaggtcgagctggaagaagaggattg
gatgatcgaggaattgtgattatgatgtgtgatgaacaattggaacccaccgtagctaga
aatatggtaaaaggagaagctgatcgattagactcggcatttcatcttggttataatatg
attcttaacttgatgcgagtcgaaggtgtaagcccggaatatatgctcgaacgatgtttt
tatcaatttcaaagtagtgatcaacttccagtacttgaaaatgagattcgaggtctacaa
gctgcccgagctgagatcaccgttccgcacgaaagcttagtaaaggaatactacgacata
cggcacgaattaaatattcaaaaccaagatttacgtgaagttatcaatcatccaacttat
tcattaccttttcttcaacctggtcgacttgtcagagtcaaattcggcgaaattgattat
gattggggatgtgtagtgaattttcaaaaacgacttggtgatcgaggcaaaccactgggt
ccagacgtaccggctcaacagacttttatagtcgatgtacttttacacattgcttctgca
caggaagttcaaaaggggaagggtacgctgggaggttcgtcaaattttgttaaaccttgt
ccagaaggagacgcaggggaatttgcagtggtaccagtgttactatctaccctagacggt
atctctcgaattaggatcttcttacccaaagatctcaagcccctggagtctcgccagaca
gcattaaaggcagtaaaagaagttaagaggaggttcccagaaggaattgcattacttgat
ccagtagaaaatatgggaattcaagatgaagaatttcataaattacttaaaaggattgaa
acattagaatctagcttaaagaatcataaattaattaaagaagacaaattaagtgaatgg
tatgaattgtattctaaaaaagaacaaatctcaaattcgattaaacttatacgacataag
atttccgatactcataatgtgatttatatggaagatttaaagaatcgaaaaaaagcgtta
agaagacttgggtttagtaataaagatgatgtggttgaaattaaaggaagggttgcatgt
gagattagttcgggtgatgagttgttattgacggaaatgattttcaatggtgcttttagt
gaattaacacctgagcaatgtgcagcattacttagttgttttgtgtttaccgaaaaaagt
gaacagattacgaaacttaaggctgaattggaaggacctatgaagaagatgaaagaagcg
gctactaagattgcacatgagattaaagaagctcatattgcgattgatgaagttgaatat
gtaaattcatttaaaaccgaaatgatggatgcagtttataattggtgtaaaggatctaca
tttgctgagatatgtaaaatgacggatatctttgaaggttcattaattagatgttttaga
agattacaagaattgattagacaaatgtcaatggcagccaaagcgattggaaatgttgaa
ttagaagaaaaatttaatcaatcacttgaaaaattagaaagaccattaagtgtagtattc
aatccttctttgtacctttga
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