Melampsora larici-populina: MELLADRAFT_117867
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Entry
MELLADRAFT_117867 CDS
T03138
Name
(RefSeq) hypothetical protein
KO
K06100
symplekin
Organism
mlr
Melampsora larici-populina
Pathway
mlr03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
mlr00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
MELLADRAFT_117867
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mlr03021
]
MELLADRAFT_117867
03019 Messenger RNA biogenesis [BR:
mlr03019
]
MELLADRAFT_117867
Transcription machinery [BR:
mlr03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
MELLADRAFT_117867
Messenger RNA biogenesis [BR:
mlr03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
MELLADRAFT_117867
U7-dependent histone pre-mRNA processing factors
MELLADRAFT_117867
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
XPC-binding
Motif
Other DBs
NCBI-GeneID:
18926105
NCBI-ProteinID:
XP_007415501
JGI:
Mellp1_117867
UniProt:
F4S2C6
LinkDB
All DBs
Position
Unknown
AA seq
1345 aa
AA seq
DB search
MTSSSSNDALLLFSTAISSSPNSIQQRKTLIQLKNQFDSNPALLPILYPSLLSLISSQSN
HPSIKKWVSSIIELAICRPNLNLSSDQRLQIIIQSTETIHKILNSQDLEPNSDLIESKKF
AIQAATTSYPIIFKLINTKSTSDHTRTWTFINQTKSIILSIFRSTSQNVPLGLKITSIKY
LQRLIQVGTKGGSADPRKRSEDPSISMCSANGNSFIKPKEIEQESNLLLEELIRLLYQTN
SPEIASAIIVTTGTLVRHRPTLSTTIINTLTSYIPPSSPLAHNNKPGLQIKGVEKTLRIT
LSHLERHTPSPQIREALVNQLKRLEELNEKEKDRKRRRKEEDASAKKRAKSGNTMVTPVA
QQPTVVEDHERNQSQLQGFDVTSLGLELVVELVIANLLALDDQTLHEAMASFRYTPPTPN
NIPDQSIQPTAALPIPSMISDPITRQPQVPIHVSPPTTRTSTPIPTGSPVRPTMEPIISS
SDIDPEEEIIIPIIEEEEDIEEEKEGIISKWEPESPLFLNEPNRRLLLKFTLDRIAMKED
EVGHEGVWSTLLARLVTRGMDGGGGEGGEEVEERREDVRAALFGFVIADFPKRMHFARVW
LMEEWLATRKQQVDEYPHSIGFTSSTTSIGMNAYDRWLGHILDHILTLSTSTNSQGERNT
RHLLSQFLLDLPNLPEKELNRLVDLCEEPEMLTIGFTSLREITSLRPTLRFKTLDLLLGL
TTHKSRQTRNAAIVSVKSWVGSSGREWKVLGERVVSFAIQLVQRLEENNEEEEEEEELQT
EENLGDGDEGMEDGEVNGNDHGVRFAVVENAVLQSGLGKAKDEETVVRHLELLLALSVKN
PDLLDHLFRVYPNVSPHIRDCVQQLITPLIRSLGAKHPKIVSLIENCQTGSESLVLRILN
ISTEKGGKPPQVIIEAIKNLANTSTNLSPRFIIPLIGELNKEEILFNLPKILSLLNGTLQ
EKLEVKSVFESIIQLPPNNFGSVSTNAPRINRGNEVLLTPVELLVKLHQTDDSGGKISIK
QAIEAIGLCFSMTEIFKPEVLAAFMQQVVDEMTLPTLFLRTVIQAVQTYKSLQPFVSTTL
LSRLIIKKIWTIGQLWEGFMRCSKIIAPHSFGALLQLPREQLKELVGKQGVLKAPLREYV
VKKAGNNKSRVMGLLEILSDTPTTPTTPLPTTPTTITNNDGNHEGSMGIEGSGTRCELGL
ENGKEDEKVGEVENVGDEKVTEEKVGEVGKVGDENITEEKVGEESVGNEKVGEETIGDEK
ITEGKLGNEEEESKLEKCKENEVEKVKELNGLVNDTEEIEPQTQTEVGIGASKSEREGNL
NLLESNSTINTNQSDPKSLILADVG
NT seq
4038 nt
NT seq
+upstream
nt +downstream
nt
atgacaagttcaagttcaaatgatgcactcttactattctcaacggccatctcatcctca
ccaaactcaattcaacaacgtaaaactctcattcaacttaaaaatcaattcgattcaaat
cctgctttattgccgattctatatccttctttattatctctcatctcatctcaatcaaat
catccttcgatcaaaaaatgggtatcttcaataatcgaattggctatctgtagacctaat
ctaaacttatcatctgatcaaagattacaaattataattcaatctacagaaactattcat
aagattttaaattcacaagatctagaacctaattcagatttaatcgaatccaagaaattc
gcaatccaagcagccaccacatcatatcccatcatctttaagttaatcaacacaaaatca
acttcagatcatacaagaacttggacattcatcaatcaaaccaaatcaatcatcttatca
atctttagatcaacttctcaaaacgttccattaggattaaaaatcacttcaatcaaatat
cttcaaagattaattcaagtcggaaccaaaggtggttcagctgatcctagaaaacgatca
gaagatcctagtatctcaatgtgttctgctaatggaaattcattcatcaaaccaaaagaa
attgaacaagaatctaatttattattagaggaattgattaggttactttatcaaactaat
tcaccggagatagcatcagccatcatcgttactacaggtacattagtacgacatcgaccc
accctatccaccacgatcataaacaccttaacttcctacatcccaccttcctcaccactt
gcccataacaataaaccaggacttcaaatcaaaggagtcgaaaaaacactacggatcacc
ttatcacatttagaaagacatacaccaagtccacaaatcagagaagctttagtaaaccaa
ttgaaaagattagaagaattaaatgaaaaagaaaaagatcgaaagaggcgaaggaaagaa
gaggatgcgagtgccaagaaacgagccaagagtgggaatacgatggtgacccctgttgct
caacaacctactgttgtggaagatcatgaaaggaatcaatcacagttacaaggatttgat
gtgactagtcttggattagaattagtggtcgaacttgtgattgctaatttacttgcattg
gacgatcaaaccttacatgaagccatggctagctttaggtataccccacctaccccgaat
aatatccccgatcaatcaatccaacctacagccgctttacccatcccatcaatgatttct
gatccaattacaaggcaacctcaagttccgattcatgtctcgccaccaaccacaagaact
tcaactccaatcccaacgggttcacctgttagacctaccatggaacccatcatttcaagt
tcagatatagatccagaagaagaaatcatcataccgatcatagaagaagaagaagacata
gaagaagaaaaagaaggcatcataagcaaatgggaacctgaatctcctttatttcttaat
gaaccaaatcgtagattgttattgaaattcactctggatcgaattgctatgaaggaagat
gaagtgggtcatgaaggggtttggtctactcttttggctagattggttactagaggtatg
gatggtggtgggggtgaaggaggtgaagaagttgaggagagaagagaagatgtgagagct
gcactttttggatttgttatagcggattttccaaaacggatgcattttgcgagggtttgg
ttgatggaagaatggcttgcaacacggaaacaacaagttgatgaataccctcactcgata
ggattcacaagtagtactacaagtattggaatgaatgcatatgatagatggttaggacat
atactagatcatattttaactcttagtactagtactaattctcaaggagaaaggaacaca
cgacatttattatcacaattcttattagatttacctaacttacctgaaaaagaattgaat
agattagtcgatctttgtgaagaacctgagatgttgacgattggatttacatctttaaga
gaaatcaccagtttgcgacctacacttaggtttaagactttagatttgttattaggattg
actacacataagtctagacaaactagaaatgcagctatcgttagtgttaaatcttgggtt
ggttcatcgggtagagaatggaaagtcttgggagaaagagtggttagttttgccatccaa
ttggtacaaaggttagaagaaaataatgaagaagaagaagaagaagaagagttacagaca
gaagagaatttaggtgatggagatgaaggaatggaagatggtgaagtcaatggaaatgat
catggagttcgatttgctgtagttgaaaatgcggtcttacaatctggtttaggtaaagct
aaagatgaagaaactgttgtgagacatcttgagttacttttggctttatcagttaagaat
ccggatttattggatcatctttttcgagtttatccaaatgtatcaccacatatcagagat
tgtgtacaacaacttattacaccattaatccgatcactgggagccaaacatccgaaaata
gtttcattaattgaaaattgtcaaaccggatccgaatccttagttttaagaattttaaat
atctcgaccgaaaaaggaggtaaaccaccgcaagtgattatagaagcgattaaaaattta
gcaaatacatcgactaacctttcacccagatttattataccattgattggtgaattaaat
aaagaagagattttatttaatttacctaagatcttaagtttattgaatggtaccttacaa
gagaaattagaagtgaaatctgtatttgaatcgattatccaattaccacctaataatttc
ggatctgtttcaactaatgcacctagaatcaatcgaggtaatgaagttttattaacaccg
gttgaacttttagtgaaattacatcagactgatgattcaggtggtaagatttcgatcaaa
caagctattgaagctattggactttgtttttcgatgacggagatcttcaaacctgaagtt
ttggcggcttttatgcaacaagtagtagatgaaatgactttacctactttgtttcttaga
acagtaatccaagccgttcaaacttataaatcattacaaccatttgtttctacaacactt
ttgtctagattgattattaagaagatttggacgattggacaactttgggaagggtttatg
agatgttcaaagatcattgcacctcattcgtttggagcacttttacaattacctagagaa
caattaaaagaattggtgggaaaacaaggtgtattgaaagctccattaagagaatatgtg
gttaagaaagcgggaaataataagagtagagtgatggggttattggaaatcttgtctgat
actcctaccacacctactacaccattacctaccacccctactacgattacgaataatgat
gggaatcatgagggtagtatgggtattgaaggtagtggtactcgttgtgaattaggatta
gagaatgggaaagaagatgaaaaggttggagaagtagaaaatgttggagatgaaaaggtt
acagaagaaaaggttggagaagtaggaaaggttggagatgagaacatcacagaagaaaag
gtcggagaagaatcggttggaaatgaaaaggttggagaagaaacgattggcgatgaaaaa
attacagaaggaaagcttggaaatgaagaagaagaatctaaacttgagaaatgtaaagag
aatgaagttgaaaaagttaaagaattgaatggtttagtaaatgatactgaagaaattgaa
cctcaaactcaaacagaagttggaattggagcatccaagtcagaaagagaaggtaatttg
aatctattggaatctaattctactattaatacaaatcaatcggatcctaaaagtttaatt
ttagctgatgtgggataa
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