KEGG   Melampsora larici-populina: MELLADRAFT_35470
Entry
MELLADRAFT_35470  CDS       T03138                                 
Name
(RefSeq) hypothetical protein
  KO
K12626  U6 snRNA-associated Sm-like protein LSm7
Organism
mlr  Melampsora larici-populina
Pathway
mlr03018  RNA degradation
mlr03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:mlr00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    MELLADRAFT_35470
  09123 Folding, sorting and degradation
   03018 RNA degradation
    MELLADRAFT_35470
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:mlr03019]
    MELLADRAFT_35470
   03041 Spliceosome [BR:mlr03041]
    MELLADRAFT_35470
Messenger RNA biogenesis [BR:mlr03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     MELLADRAFT_35470
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     MELLADRAFT_35470
Spliceosome [BR:mlr03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    MELLADRAFT_35470
SSDB
Motif
Pfam: LSM Hfq
Other DBs
NCBI-GeneID: 18927468
NCBI-ProteinID: XP_007409424
JGI: Mellp1_35470
UniProt: F4RJD2
LinkDB
Position
Unknown
AA seq 108 aa
GRGGGGVSSRGGGRNEDKPKREAILDLSKYVNQRVIVKFMGGRQITGILKGYDGLLNLVM
DEVEESLKPEETTKTRSLGLAVIRGTSLVVISPVEGFEEIANPFINQQ
NT seq 327 nt   +upstreamnt  +downstreamnt
ggtagaggaggaggaggagttagttcaagaggaggaggaagaaatgaggataaaccgaaa
agagaagcgattttagatttatccaagtatgtcaaccaaagagtgattgtaaaatttatg
ggaggtagacaaattactgggatcttaaaaggttatgatggtttattaaacttagtaatg
gatgaagtagaagaaagtttaaaaccagaagaaaccacaaaaacaagatcacttggatta
gcagtaataagaggaacgagtttagtggttatcagtccagtagaaggatttgaagaaatc
gcaaatccatttataaatcaacaataa

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