Melampsora larici-populina: MELLADRAFT_38438
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Entry
MELLADRAFT_38438 CDS
T03138
Name
(RefSeq) hypothetical protein
KO
K14403
cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
Organism
mlr
Melampsora larici-populina
Pathway
mlr03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
mlr00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
MELLADRAFT_38438
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mlr03021
]
MELLADRAFT_38438
03019 Messenger RNA biogenesis [BR:
mlr03019
]
MELLADRAFT_38438
Transcription machinery [BR:
mlr03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
MELLADRAFT_38438
Messenger RNA biogenesis [BR:
mlr03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
MELLADRAFT_38438
U7-dependent histone pre-mRNA processing factors
MELLADRAFT_38438
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CPSF73-100_C
Beta-Casp
Lactamase_B_6
Lactamase_B
RMMBL
Lactamase_B_2
Anti-Pycsar_Apyc1
Lactamase_B_3
RILP
Motif
Other DBs
NCBI-GeneID:
18927718
NCBI-ProteinID:
XP_007414025
JGI:
Mellp1_38438
UniProt:
F4RY57
LinkDB
All DBs
Position
Unknown
AA seq
672 aa
AA seq
DB search
MLGAGQEVGRSCCVIEYKSVTVVCDTGVHPAYTGMAALPFIDEIDWSTVDAILITHFHLD
HAASLTYIMENTNFKEGNGKVFMTHPTKAVYRFLMQDFVRMSTIGTDGELFNEEQMTLSY
ESINAIDYHQEISLGSLRFTSYPAGHVLGAAMFLIEIAGIRVLYTGDYSTEEDRHLIPAK
VPNWNEKPDVMICESTYGVQSLEPRPEKEERFTALVQMILKRGGRVLMPVFALGRAQELL
LILDEYWSNHPELNSIPIYYISNLAAKCMKVYQTFIHGMNEEIKSKFNKGINPWTFFREG
KGLFKKGYVTNLKTLDKFDDRGPCVVMASPGFMTNGASRELLERWAPDRRNGLLVTGYSI
EGTMAREMLKEPQEITGIKGNKIPRRIEVIYISFSAHVDYTQNAAFIDQVMPTHLVLVHG
EFNNMTRLRNALKDKYLLAKNEMQIYTPRNVETLRIKFKASRIARAIGSLADTNLSVGQT
ISGILVSKDSAYTLLSSTDLKDYTGLSTSSIFQKVSININVGWEIVRWHLNCMYGRIEEG
IDLNDKLTFRVMETVDVKKVEDHQVLLEWVGSVTNDMIADSVLALLLGIDRSPASLKRYG
NHCDHHHSSTHQKPKDGWIERVDKLIGFLDGHFGHVELLNEPARLKVWIDEVWSEVFLDD
LVGSFFPLSLSF
NT seq
2019 nt
NT seq
+upstream
nt +downstream
nt
atgttaggtgcaggtcaagaagtaggaagaagttgttgtgttatcgaatataaatcggtc
actgtggtttgtgatacgggtgttcatcctgcttatactggaatggctgctttacctttt
attgatgaaattgattggagtactgttgatgcaattctgatcacacattttcatctcgat
catgctgcttcattaacatatatcatggaaaacactaatttcaaagaaggtaatggaaag
gtctttatgacacatccgactaaagcagtttaccgattcttaatgcaagattttgtaagg
atgagtacgattggaacagatggtgaattattcaatgaagaacaaatgacactatcctac
gaatccatcaatgccatagattatcatcaagagatttccctaggatcgcttcgattcaca
tcatatccagccggtcatgtcttaggtgcagctatgtttttgatcgagatagcaggcatc
agagtgctttatacgggtgattattctacggaagaagatcgacatttgatacctgctaaa
gtcccgaattggaatgaaaaacctgatgtgatgatttgtgaatcgacttatggtgttcaa
tctcttgaacctagacctgaaaaagaagaaaggtttactgcattagtccaaatgatctta
aaaagaggtggtagagtcctaatgccagtctttgccttaggaagagctcaagaattatta
ttaatcttagatgaatattggtcaaaccatcctgaattaaattcgattccgatttattat
atttcgaatctagcagctaaatgtatgaaagtttatcaaacgtttattcatgggatgaat
gaagagatcaaatctaaatttaataaagggatcaatccttggacgttttttagagaaggt
aaaggtttgtttaagaaaggatatgttacgaatttgaaaactttagataagtttgatgat
cgtggaccttgtgttgtgatggctagtcctgggtttatgaccaatggagctagtcgtgaa
ctattagaaagatgggcacctgatcgaagaaatggtctattagtcactggttattccatt
gaaggtacaatggccagagaaatgttaaaagaaccacaagagatcacagggatcaaagga
aacaagattcctagaagaatcgaagtgatttatatttcattttctgcacatgtagattat
acacaaaacgcagcatttattgatcaagtgatgccaactcatttagttttggttcatgga
gaatttaataatatgactagacttagaaacgctttgaaagataaataccttttagctaaa
aacgaaatgcagatttatacacctaggaatgtagaaactttgagaatcaaattcaaagca
tctagaatagcaagagcaataggtagtttagcagacacgaatttaagtgttggacaaacg
atctcaggcatcttggtttccaaagattcagcttatactttattatcttcaactgattta
aaagattatactggactttcaacttcatctatttttcaaaaagtttcgattaatattaat
gtaggttgggaaatcgttagatggcatttgaattgtatgtatggtaggattgaagaaggg
attgatttgaatgataagttgacgtttagagtgatggaaactgttgatgtgaaaaaagtc
gaagatcatcaagttttattggaatgggttggctcagttacgaacgatatgatagcagac
tcagtcctagctctcttactaggaatagacagaagtccagcttctctaaaacgttatgga
aatcattgtgatcatcatcattcgtcaactcatcaaaaacctaaagacggttggatcgaa
agagttgataagttaattggtttcttagatggacattttggacatgttgaattgttgaat
gaaccggctagattaaaggtttggatagatgaagtttggtctgaagtgtttttagatgat
ttggtgggttctttttttcctctttctctctctttttga
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