Melampsora larici-populina: MELLADRAFT_46519
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Entry
MELLADRAFT_46519 CDS
T03138
Name
(RefSeq) hypothetical protein
KO
K12813
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:
5.6.2.6
]
Organism
mlr
Melampsora larici-populina
Pathway
mlr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mlr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
MELLADRAFT_46519
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
mlr03041
]
MELLADRAFT_46519
Enzymes [BR:
mlr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
MELLADRAFT_46519
Spliceosome [BR:
mlr03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
MELLADRAFT_46519
Complex C
U4/U6.U5 tri-SnRNP related factors
MELLADRAFT_46519
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
HA2_N
DEAD
AAA_22
AAA_19
AAA_30
PWI
Cas3-like_C_2
SRP54
AAA_16
Motif
Other DBs
NCBI-GeneID:
18928350
NCBI-ProteinID:
XP_007404886
JGI:
Mellp1_46519
UniProt:
F4R684
LinkDB
All DBs
Position
Unknown
AA seq
1057 aa
AA seq
DB search
MSSSKLRQWVSDSILRLFEMSDSAMVDYMIKTASTATTPSGLITSLTHVGLSSTAETEYF
ANELFNRVPRASSSKSSEIEAKALQKQKFTLVLDEQPEERVEIKKQKKDKGTLKKKTQSD
KNGWESEEEDRATKKRRRSIDSNKSGLEDEMEKETEAERIERERLEDARERDEFAERLKA
KDRDKTKKIVEDKTSKLTADQIRRRNLENDEEARQAAMPEVRKRARQEYLSKRELQQIEL
LKQEIMDEEADFKGVVMTQREIRELNKKKEVLRLAQERMGIDDGYDGYMMPEDYITEQGR
LDKKKKHDALYKRYEESKRPADEFVTDVDRYEAIQTQNATTNYGALDRPSLVEDYEFVFD
ESATIAFLTDNDSRIGGTLSAKDAALQAQIDAAEKRAKSIDEVRKSLPVYEWRDRLLEAV
AEYQVMIVVGETGSGKTTQLPQYLHEAGYTKDGGKIGCTQPRRVAAMSVAARVAEEMGVR
VGDAVGYSIRFEDCTSPKTVIKYMTDGMLLREFMTEPDLAGYNAMIIDEAHERTLSTDIL
LGLVKDIARFRPDFRLLISSATMNAAKFSEYFDDAPIFNIPGRMYPVDILYTPSPEANYL
HAAVTTVFQIHTTQPKGDILVFFTGQDEIEAAHENLEETARALGNKIGELVICPIYANLP
TEMQAKIFEPTPDKARKVVLATNIAETSITIDGVVYVIDPGFVKQNSYNPRTGMESLVVV
PCSRAAANQRAGRAGRVAPGKCFRLYTKSAYMKELDEDTVPEIQRTNLANVVLLLKSLGI
NDLIGFDFLDPPPGDTLIRALDLLYALGAFNDRGELTKIGRKMAEFPMDPMLSKAILESE
KHKCTEEVLSIVSMLSESSSIFYRPKDKKLHADRARLNFVQPGGDHFTLLNVFDQWKETN
WSISWSYENYVQIKSLNRVRDIRDQLAALCERVEILPESNATGSIEPIQKSLLGGYFMNT
ARLSKGGDAYRTLKSNQSVYIHPSSSCFQAQPPPRMILFYELVLTSKEYARQVMEINKPE
WLLQAAPHFFKEADLEVFGKKKLPKQTQVRKAEQLPE
NT seq
3174 nt
NT seq
+upstream
nt +downstream
nt
atgagctcatcgaaactgcgacaatgggtcagcgatagcatcttgcgattgttcgagatg
tcggatagtgcgatggtagattacatgatcaagacagcaagtactgctactactccaagt
ggactcatcacatccttaactcacgtcggactcagctcaacagctgaaacggaatatttt
gcaaacgagcttttcaatcgtgtaccgcgagcttcttcatccaaaagttctgaaatcgag
gcaaaggcactgcaaaaacaaaaattcacacttgttttagatgaacaaccggaagagaga
gtagaaattaagaaacaaaagaaagataaagggactttgaagaagaagactcaatcagat
aaaaatggatgggaaagtgaagaagaagatcgagcaactaagaaacgaagaagatcgatt
gattccaataaatctggacttgaagatgaaatggaaaaagaaactgaagcagaaagaata
gaaagagaaagattagaagatgcgcgtgaaagagatgaatttgctgaacgattgaaagct
aaagatcgagataaaacgaaaaaaatcgtagaagataaaacatctaaattaacagctgat
caaatccgacgaaggaatctcgaaaacgatgaagaagctcgtcaagctgccatgcctgaa
gttaggaaaagagctcgacaggaatacttgagcaagcgagaattacaacaaattgaatta
cttaaacaagagattatggatgaagaagctgatttcaagggtgttgtgatgactcaacgg
gaaatcagggaattgaataagaaaaaagaagtactgcgactcgctcaagaacggatggga
atcgatgatggatacgatggatatatgatgcccgaagattacatcaccgaacaaggaagg
ttagacaagaagaaaaaacatgatgctctgtacaagcgttacgaagaaagcaaacgacca
gccgacgaatttgtgacagacgttgatcgatatgaagctattcaaactcaaaatgctacc
actaactacggtgcactcgatcgaccatctcttgtcgaagactatgaatttgttttcgat
gagagtgcgaccattgccttcttgacagacaatgattccagaataggtggtactctgagt
gccaaagatgcagctctacaagcacagattgatgcggcagaaaagcgagccaagtctata
gatgaagtacgaaaatctctcccggtatatgaatggcgagatcggttgctcgaagctgtt
gcagagtatcaagtgatgattgtggttggggaaactgggtctggaaaaactacccagctg
cctcaatatcttcacgaggccggctacacgaaagatggtggtaagataggttgtacacaa
ccacgaagagtggcagccatgtcggtggcagcaagagtagcagaggaaatgggggtacgg
gtaggagacgcggttgggtattctatccgtttcgaagactgcacttcccccaagacagtc
atcaaatatatgacagatgggatgctactaagagaattcatgacagagcctgatcttgcg
ggttataacgccatgattattgatgaagcccatgagcgtacgctgagtactgatatcttg
ctgggcttggtcaaggacattgctcggtttcgtcctgatttccggcttctgatatccagt
gctaccatgaatgctgccaagttttcggaatactttgatgatgcgccgattttcaatatt
cctggaagaatgtacccagttgatatcttatacactccgagtcctgaagcaaattatcta
cacgccgctgtcaccactgttttccaaattcacacgacacaacccaagggtgacatcttg
gtgttttttactggtcaagatgaaattgaagctgctcatgaaaacttggaagaaacggct
cgagcattaggaaacaagattggagaactagtcatttgtccaatttatgctaacttaccc
accgaaatgcaggccaagatctttgaacctacacctgataaagctcgaaaagtggtactt
gctaccaatattgctgagacatctatcaccatagacggagtggtgtacgtaatcgatcca
ggctttgttaaacagaattcatacaatcctcggacgggtatggaatctctagtggtcgtt
ccctgttcccgtgctgcagcaaatcaacgtgcaggtagagcaggtcgtgtggctcccggc
aagtgcttccgactatacactaaatcagcttacatgaaggaattggatgaagacaccgtg
cctgagatccaacgaacaaatttagccaacgtagttttactactcaagtcactcgggatc
aatgatctgatcggcttcgatttcttagatccacctcctggtgatactttgatccgggct
ttggatttgctctatgcacttggagcgttcaatgatcgcggtgaattaaccaagattggt
cgaaaaatggcagaattcccgatggaccctatgttatctaaagccattttagaaagtgaa
aaacataaatgcactgaggaagttctttccattgtgtctatgctttcggagagtagttca
atattttaccgacctaaagataagaaactacacgcggaccgggctcgactgaacttcgtt
caaccaggtggagaccacttcacgttattgaatgtgtttgatcaatggaaggagacaaac
tggtctatctcatggtcatatgagaactatgttcagatcaagtccctgaatcgagtccgc
gatattcgagatcaacttgctgctttatgcgaacgggtcgaaatcttgcccgaatctaat
gccacagggtcaatagagccaattcagaaaagtttactaggtggttatttcatgaacacc
gcccggctcagtaaaggaggtgacgcgtacaggactttgaaatcgaaccaatcagtttat
attcacccgtcatcaagctgtttccaagcccagccaccacctcgaatgattttattctat
gagctggttttgaccagcaaagaatatgcaagacaagttatggagatcaacaaaccagaa
tggttacttcaagctgctccacatttcttcaaggaagctgatctagaggtctttggtaag
aaaaaacttcccaaacaaacccaagtgcgtaaagcagaacaactaccagagtag
DBGET
integrated database retrieval system
