Melampsora larici-populina: MELLADRAFT_46528
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Entry
MELLADRAFT_46528 CDS
T03138
Name
(RefSeq) hypothetical protein
KO
K12603
CCR4-NOT transcription complex subunit 6 [EC:
3.1.13.4
]
Organism
mlr
Melampsora larici-populina
Pathway
mlr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mlr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MELLADRAFT_46528
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mlr03019
]
MELLADRAFT_46528
Enzymes [BR:
mlr01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
MELLADRAFT_46528
Messenger RNA biogenesis [BR:
mlr03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
MELLADRAFT_46528
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
MELLADRAFT_46528
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Exo_endo_phos
LRR_8
LRR_4
LRR_14
LRR_LRWD1
LRR_R13L1-DRL21
Motif
Other DBs
NCBI-GeneID:
18928352
NCBI-ProteinID:
XP_007404877
JGI:
Mellp1_46528
UniProt:
F4R699
LinkDB
All DBs
Position
Unknown
AA seq
556 aa
AA seq
DB search
MAINSTHQTTSSLSTSSSSTTSTSTAITATTTSNGGSLIPTERGSQKHSNGQVTQSWTTV
DMGGLKLKSLSDALFNYDFLTTLYIPHNSLTSLPPMISRLTSLTVLDVSSNKLTALPAEL
GMITTLQQLFVFDNHLTSLPPELGSLHQLEELGVEGNPLAEALLSTIQKEGTSSLVAYLR
DSCPVPLPPSERDWISIEPECSLLSELPSNLNTHEIPNETFTMMCYNILCERYASDRMYG
YTPSWALNWEYRKDLILQELMQYGADLICLQEVDVEQYEDFFVQNLKDQGYEGVFFPKSR
ARTMGSEERRHVDGCATFFKTSIFQLIERECVEFNQIPMRSESHKTSDMFNRVMTKDNIA
VIAMLEHRRSGTRQLVANVHIHWDPEFRDVKLIQTAMLIEQVENLADRFAKLPPRHSHSP
KYQRGTEIPIIVCGDFNSVPTSGVYDYLSHGNIEATHDDFNSFNYGPYTQQGVQHPLKLK
SAYSHLGELPFTNYTPGFKGVIDYIFYNEEVLDVTGVLGKIDETYLEKVVGFPNAHFASD
HVPVLAEFKVKQNGNR
NT seq
1671 nt
NT seq
+upstream
nt +downstream
nt
atggcaatcaactcaactcatcaaacaactagctcattatccacctcatcatcatccaca
acaagcacaagcacagcaatcacagcaaccaccacctccaatggaggctcactcataccg
acagagagaggtagtcaaaaacatagtaacggtcaagtgactcaatcatggacaacggtc
gatatgggaggacttaaattgaaatcactttcagatgcattatttaattatgatttcctt
acaacactttatatcccacataactcacttacttccttaccacctatgatttcaagatta
acttcactgactgtactggatgtttcatctaataaactaacggctttacctgctgaatta
ggcatgatcaccacacttcaacaactgtttgtgtttgataatcatttaacttcattacca
cctgaactaggatcattacatcaacttgaagaattaggtgtcgaaggaaatccattagcc
gaggcacttttaagtacgatacaaaaagaaggtacttcgtcacttgtagcttatcttcga
gattcgtgtccagttccattaccaccatctgaaagagattggatatcgatcgaacctgaa
tgttcacttttatcagaattaccatccaacttaaacactcatgagatccccaacgaaacc
tttacaatgatgtgttataatatcttatgtgaaagatatgcatcagatcgaatgtatggt
tatacaccatcttgggccttgaattgggaatatcgaaaagatttgattttacaagaatta
atgcagtatggagccgatttgatttgtttacaagaagtagatgtagaacaatatgaagat
ttctttgtacaaaacttaaaagatcaaggttatgaaggtgtcttttttcctaagtctagg
gctagaaccatgggatctgaagaacgtagacatgtggatggttgtgctactttttttaaa
acttcaatatttcaattgattgaacgtgaatgtgtagaatttaatcaaatcccaatgaga
tccgaatcacacaaaacatccgatatgtttaaccgagtgatgaccaaggacaatatagca
gtcatagccatgttagaacatcgaagaagtggaacacgacaattagtagctaatgttcat
attcattgggatcccgaattcagagatgtgaaattgattcaaaccgcaatgttaatcgaa
caagttgaaaacttagcagatcgattcgcaaaactcccaccaagacattcacattcacct
aagtatcaaagaggaactgagattcccatcatagtctgtggtgatttcaattcagtaccg
acctcaggagtctatgattatttatcacatggaaatatcgaagctacacatgacgatttc
aattcgtttaattatggtccttatactcaacaaggagttcaacatccattaaaactcaaa
tcagcttattctcatctgggtgaattaccttttacaaattatacacctggtttcaaaggt
gtcattgattatatcttttataatgaagaggttttggatgtcactggcgtcttgggtaag
attgatgaaacttatttggagaaggtcgtgggatttcctaatgctcatttcgctagtgat
catgttcctgtactggctgagtttaaggttaaacaaaatgggaatagataa
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