Melampsora larici-populina: MELLADRAFT_47986
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Entry
MELLADRAFT_47986 CDS
T03138
Name
(RefSeq) hypothetical protein
KO
K03018
DNA-directed RNA polymerase III subunit RPC1 [EC:
2.7.7.6
]
Organism
mlr
Melampsora larici-populina
Pathway
mlr03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
mlr00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
MELLADRAFT_47986
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mlr03021
]
MELLADRAFT_47986
Enzymes [BR:
mlr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
MELLADRAFT_47986
Transcription machinery [BR:
mlr03021
]
Eukaryotic type
RNA polymerase III system
RNA polymerase III
Core subunits
MELLADRAFT_47986
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
DUF7577
DUF1178
Motif
Other DBs
NCBI-GeneID:
18928482
NCBI-ProteinID:
XP_007408913
JGI:
Mellp1_47986
UniProt:
F4RIK1
LinkDB
All DBs
Position
Unknown
AA seq
1421 aa
AA seq
DB search
MKQLVVQEAPKKIKHIQFSVLSSQEIVAISEYESTQRDLYSMSGSTDPSGFAIPGAPEPL
VKKPAKGGVLDTRLGTSDKSGTCGTCNAKMADCVGHYSYIKLILPVFHIGYFRAVIQMLQ
DICKTCARVMLSEEDRRVYLQRFRRPNLENLQRQHYAKQVNTACRKVLTCPYCGATNGIV
KKVGALRIVHEKFRAKKKADELEAFRDTFINAIKETRELAPHLHKAQEDMNPLRVLNLFR
RVTPSDCELLGLDPEVGRPEEYIWQYIHVPPVCIRPSVTQEAATNEDDVTVKLTEMIFTN
TLIKTGLVKGVPTQNIMEQWEFLQLSVAMYINAELPGVPSQMGAKPIKGFCQRLKGKTGR
FRGNLSGKRVDFSGRTVIGPDPNLSITEVAVPDRMAKVLTYPERVTAHNLDRLRQCIRNG
PDVHPGANYLIASGAPGTAGAATQFKRSLRFGNRNQIANTLRMGDTVERHLHDGDVVLFN
RQPSLHKLSIMSHRAKIRPWRTLRFNECVCTPYNADFDGDEMNLHVPQTEEARTEATELM
NVKYNLVTPRNGEPIIAATQDFITASYLLSRKDNFYDRQQFTQALQYLSDATLHIDLPPP
VIWKPIRLWTGKQVFNVLMRPNKASPVKVNIEAKCATHHKALPEFLPDMSPNDGWLVIQN
SEIMCGVVDKAIVGGGKKDSIFAVINRDYGPDEAVKAMNRLAKVSARWLANMGFSIGVGD
VTPGERLSTQKESLVAKAYKETNDLIKSSKAGQLQTLPGRDQDQTLEAMISGVLSKVRDS
LGVICMAELTRHNAPLIMATCGSKGSTINVAQMVACVGQQIISGNRIPDGFQDRSLPHFH
KKAKEPPAKGFVRNSFHSGLRATEFLFHAISGREGLVDTAVKTAETGYMQRRLMKALEDL
STRYDDSVRNSVGGVVQFTYGDDGLDPTYLEGDGEPVEFARTWRHSKATISHLDGRGLYP
YEIVQTVAKRLAEPRFAKACTTRFTDSVLNFITNSVAKPAATYRASYGMYPAMEMDGDWD
EETDLSAGVTGNKKIVANKTQVTLKQIDTFLDYCWVKYVKAKVEPGTAVGAVGAQSIGEP
GTQMTLKTFHFAGVASMNITLGVPRIKEIINASKVINGPIINAPLVANQSERAARIVKAR
LEKTYLGDITSVIEGMYSNESMYVGIHIDMDTVRRLQLEVTLDTIKWSIVNAPKLKIRED
QIQVIPRKNRIRVYVDGVLADGENVLPFYQKLMFLRRVLPGVVIKGLSKAGRTVINKNTS
NEYELLVEGYGLREVMTTDGVVGTHTMPNHIMEAQSILGIEAGRNCIIKEISYTMDSHGL
KVDPRHMMLLGDIMCYKGEVLGITRFGVAKMKDSASFFSSFEKTTDHLFDAALYSKRDAI
EGVSECIIMGNPANDIGTSAACLVSDLPVLPPPRKLLFENC
NT seq
4266 nt
NT seq
+upstream
nt +downstream
nt
atgaagcaattggtcgttcaagaggctcctaaaaagataaagcatatacaattttcagtt
ttatcttctcaagaaatcgttgctatctccgaatatgaatccactcaacgagatttatat
agtatgtccggttcgaccgacccatctggttttgcaatccccggcgcgccagaacctctc
gtgaagaaaccagcgaaaggaggtgtcttagataccaggcttggtacatccgataaatca
ggaacatgcggcacttgtaacgctaagatggccgattgcgttggacattattcatatatc
aaacttattcttccagtcttccatattggttattttcgggctgtgattcaaatgcttcaa
gatatatgcaagacttgtgcaagagtgatgttgagtgaagaagataggagagtttaccta
caacgatttcgaagaccaaatcttgaaaatttacaacgtcaacattatgcaaaacaagtt
aacacagcttgtcgtaaagtcctcacttgtccatattgtggtgctactaatggtatcgta
aagaaagtgggtgcacttcgaatcgtacatgaaaaattcagagccaagaagaaggccgac
gaacttgaagcgtttcgggatacatttatcaatgcaatcaaagaaactagagaacttgca
cctcatttacacaaagcacaagaagatatgaatccactcagagtactaaatctattccgg
cgagtgacaccctctgattgcgagcttttgggtttggatccagaagtaggccggcctgaa
gaatatatttggcaatatatacatgttcctccggtttgcattcgaccaagtgtaacccag
gaggcagctacgaatgaggacgacgtgacagtcaagttgaccgaaatgatctttacaaat
acattgatcaagactggtttggtcaagggtgttccaactcagaatatcatggaacaatgg
gagtttttacaactctccgttgcaatgtacatcaatgccgaactccctggagtgccttca
caaatgggtgcaaaacctataaaaggtttttgtcaacgactgaaaggaaaaactggtcgt
tttcgagggaatctttcgggtaaacgtgtggatttctcagggagaacagtcattggccca
gatccaaatctcagtatcactgaagtggctgttccagatcggatggctaaagttctgacc
tacccggagcgcgttacagcgcataacttggaccgtttgcgtcaatgcatacgtaatggt
cctgatgtccatcccggtgctaactatctgattgcctctggagcacctggtactgcagga
gcagcaacccaattcaaacggtctttgaggttcggtaatcgtaatcagatcgcaaacact
ttacgaatgggggatacagtggagaggcatttgcacgacggagatgtggtattattcaat
cgacaaccgagtttgcacaaactttccatcatgtctcatcgcgcaaagatacggccgtgg
cggactctgcgattcaatgaatgtgtctgtacaccgtacaatgctgattttgacggagac
gagatgaatttgcacgtcccgcagacagaggaagctcgcacagaagcaaccgaactcatg
aacgtaaaatacaatcttgttactccacggaacggcgagcccatcatcgcagccactcaa
gatttcatcactgcttcctacctcctctcgagaaaagacaatttctacgatcgccagcaa
ttcacacaggccttgcaatacttatcagatgctactttacatattgatctacctccccct
gttatatggaaacctatccgactttggaccggaaaacaagttttcaacgtgctcatgcga
cctaacaaagcatcaccagtcaaagtcaacattgaggccaaatgtgccacccatcataaa
gctttacctgaattcttacctgacatgtctcccaacgatggatggcttgtcatccaaaat
tcagagatcatgtgtggtgtcgtcgataaagctattgtaggtggtggtaaaaaagattca
atctttgctgttatcaatcgagactatggtccggacgaagcagtcaaagccatgaatcgt
cttgcaaaagttagtgcgcgatggctggccaacatgggattttccatcggagttggtgat
gtcacacctggtgaaaggctgtctacacaaaaagaaagtttggtagcaaaagcttacaag
gaaacgaatgacttgattaagagttcgaaagcggggcagctacaaactctaccgggtcgt
gatcaggatcaaacgctagaggcaatgatatcaggtgtcctctctaaagtcagagatagt
ttgggtgtcatttgtatggcagaacttactaggcataacgctcctttgatcatggctacc
tgtggatccaaaggttctacaatcaacgtcgcccagatggttgcttgtgtcgggcaacaa
attatcagcggtaaccgtattcccgatggatttcaagatcgatcgttacctcatttccat
aaaaaagccaaggagccacccgccaaaggattcgttcgtaacagttttcattcaggtctt
cgagccacagaatttctctttcacgccatctctggaagagaaggtctggtagatacggcc
gtcaaaactgcagagacaggttatatgcaacgtcgactgatgaaagcattagaagatctt
tccactcggtatgacgactctgtgcggaattcggttggtggtgtggtacaattcacatac
ggtgatgacggattagatccaacgtatcttgaaggagatggggaaccggttgaattcgct
cgaacatggcgtcattccaaggccactatctcacatctcgacggtcgaggtttatatcca
tatgagattgtacaaacagtggccaaacgacttgctgagcctcggttcgccaaagcttgt
acaacccgattcacagattcagttttgaatttcattaccaactcagtagccaaaccagca
gctacttatcgagcgagttatggaatgtatccagccatggagatggatggcgattgggat
gaggagactgatctatcagctggagttaccggtaataagaagatagttgcaaacaagaca
caggtgacgctcaaacaaatcgatactttcctagactattgttgggtcaaatacgtcaag
gcaaaagtggagcctggcacagcagttggtgcagttggtgcacaatccattggagaacca
ggaacgcagatgactttgaagactttccattttgctggtgttgcttctatgaacattaca
cttggtgtacctcggatcaaagaaatcatcaacgcgtctaaagttatcaatggtcctatc
atcaatgcacctctggttgctaatcaaagcgagcgtgctgctagaattgtcaaagcccga
ctagaaaaaacgtaccttggtgatatcacatctgtcattgaaggaatgtactcgaatgaa
tctatgtatgttggaatacatattgatatggacacagtccgtcgcttgcagctggaagtg
actttggatacgatcaaatggtcgattgtcaacgctccaaaattaaaaatccgtgaagac
caaattcaagtgatacctcgaaaaaaccggatccgagtatatgttgatggtgttttagcc
gatggtgaaaatgtgttgccattctatcaaaagcttatgttccttagacgagttttgccc
ggtgtggtgatcaaaggcctttctaaagctggcagaactgtgattaataagaatacatca
aatgaatatgaactactggtggaaggatatggtttacgtgaggtgatgactaccgacggt
gtggtgggtacacataccatgccgaatcacatcatggaagctcaatcaatattgggaatt
gaggctgggagaaattgtatcataaaggaaatctcatatacaatggattctcatggactt
aaagtagatccacggcatatgatgctcttaggagacattatgtgttataaaggagaagtc
ttgggtatcacaagattcggtgtagctaaaatgaaagactcagcaagttttttttcttca
tttgagaaaactactgatcatttgtttgatgcagctctttatagtaaaagagatgcgatt
gaaggtgtttctgaatgtatcattatgggtaatcctgccaatgatattggtacttctgct
gcttgtttggtatctgatttacctgttttaccacccccacgaaaacttttgttcgagaat
tgttaa
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integrated database retrieval system