Melampsora larici-populina: MELLADRAFT_48571
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Entry
MELLADRAFT_48571 CDS
T03138
Name
(RefSeq) hypothetical protein
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
mlr
Melampsora larici-populina
Pathway
mlr03013
Nucleocytoplasmic transport
mlr03015
mRNA surveillance pathway
mlr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mlr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
MELLADRAFT_48571
09122 Translation
03013 Nucleocytoplasmic transport
MELLADRAFT_48571
03015 mRNA surveillance pathway
MELLADRAFT_48571
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mlr03019
]
MELLADRAFT_48571
03041 Spliceosome [BR:
mlr03041
]
MELLADRAFT_48571
Enzymes [BR:
mlr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
MELLADRAFT_48571
Messenger RNA biogenesis [BR:
mlr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
MELLADRAFT_48571
Spliceosome [BR:
mlr03041
]
Complex C
Other components
EJC/TREX
MELLADRAFT_48571
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
MELLADRAFT_48571
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
Motif
Other DBs
NCBI-GeneID:
18928534
NCBI-ProteinID:
XP_007410654
JGI:
Mellp1_48571
UniProt:
F4RNK7
LinkDB
All DBs
Position
Unknown
AA seq
434 aa
AA seq
DB search
MAEHAEDLIDYDEDDAGLAPPVTSITSTTNGGAIPSNGKDQKGSYVGIHSTGFRDFLLKP
ELLRAISDLGFEHPSEVQQECIPQAILGMDVLCQAKSGMGKTAVFVTATLQQIDPKDGEV
SMLVLCHTRELAYQIRNEYARFSKYMPDVRTAVVYGGVSIKQDADMLKAKDKCPHIIVGT
PGRLNALVRDGLLKCNTVRTFVLDECDKMLESVDMRRDVQQVFLATPHSKQVMMFSATLS
KDIRPICKKFMQNPLEIYVDDEAKLTLHGLQQHFVKIEEAAKNRKLNDLLDTLEFNQVCI
FVKSVSRAVQLDQLLRDCNFPSIAIHSGLGQEERIARYKQFKAFEKRILVATDIFGRGID
VERVNIVVNYDTPGEADSYLHRVGRAGRFGTKGLAITFVASDGDQTVLDAIQSRFEVAIT
ELPDHIEASSYMNA
NT seq
1305 nt
NT seq
+upstream
nt +downstream
nt
atggccgaacacgccgaagacctcattgactacgacgaggatgatgctggtctcgctcct
cccgtcacctctattacctcaaccactaatggtggcgcaattccttccaatggaaaggac
caaaagggttcttatgtcggtatccattcaactggtttccgtgactttttgctcaagcct
gagcttctgcgagcaatcagtgacttgggattcgagcacccttccgaagtccaacaggag
tgtatccctcaggccatcctaggaatggatgtcttatgtcaggctaaatctggaatggga
aaaactgccgttttcgtcaccgcaaccctccaacagattgatcccaaagatggcgaagtt
tctatgctggttctctgtcacactcgtgaattggcctatcaaattcgaaacgagtatgct
aggttcagcaaatatatgcccgatgtccgcactgctgtcgtctatggtggtgtctcaatc
aagcaagatgctgatatgctgaaagctaaagacaaatgtccccacatcattgtcggtacc
cctggtcgtttgaacgccttggtacgggatggactcctcaagtgcaacaccgttcgcacc
tttgttcttgacgagtgcgacaagatgctagaatctgttgatatgcgccgcgatgtgcaa
caggtcttcttggctacacctcattctaagcaggtgatgatgttcagtgcgactttgagc
aaggatatccgaccgatctgtaaaaagttcatgcagaatcccctcgaaatttacgttgat
gacgaggccaaactaacccttcacggtcttcagcaacatttcgtcaagatcgaagaggct
gcaaagaaccgaaagctcaacgatcttctcgacactcttgaattcaatcaagtttgtatc
ttcgtcaagtcggtttctcgtgcggttcaattggatcaattattgcgagattgcaacttt
ccctctatcgctattcattccggcctaggtcaagaggagcgaattgcaagatacaaacag
ttcaaagcttttgaaaagcgtatcttggttgcaactgatatcttcggtcgaggaattgat
gttgaacgggtcaacatcgtcgttaactatgacactcccggagaggccgactcctacctc
caccgagtcggacgtgctggtcgattcggaaccaaaggtttggcgatcacatttgttgcc
agtgatggcgaccagacagtgctggatgccattcaatcacgattcgaagtagccattacg
gaattaccagatcacatagaagcaagctcttacatgaacgcctaa
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