Melampsora larici-populina: MELLADRAFT_78481
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Entry
MELLADRAFT_78481 CDS
T03138
Name
(RefSeq) hypothetical protein
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
mlr
Melampsora larici-populina
Pathway
mlr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mlr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
MELLADRAFT_78481
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
mlr03041
]
MELLADRAFT_78481
03009 Ribosome biogenesis [BR:
mlr03009
]
MELLADRAFT_78481
Enzymes [BR:
mlr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
MELLADRAFT_78481
Spliceosome [BR:
mlr03041
]
Complex A
U2 snRNP components
U2 related factors
MELLADRAFT_78481
Complex B
MELLADRAFT_78481
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
MELLADRAFT_78481
Ribosome biogenesis [BR:
mlr03009
]
Eukaryotic type
90S particles
Helicases
MELLADRAFT_78481
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
HA2_N
AAA_22
SRP54
AAA_19
Flavi_DEAD
nSTAND3
Motif
Other DBs
NCBI-GeneID:
18933116
NCBI-ProteinID:
XP_007412962
JGI:
Mellp1_78481
UniProt:
F4RUX2
LinkDB
All DBs
Position
Unknown
AA seq
734 aa
AA seq
DB search
MATRNPYLSESAAGALDGFRARKVTGKQVEAAMDHSINPFTGRPYTSQYKEILSKRKALP
VFKQMPEFFEMYNRNQFVVMEGETGSGKTTQIPQYAVYSDLPHIKNKQIACTQPRRVAAM
SVAKRVADEMDVKLGEQVGYSIRFEDCTSPSTILKYMTDGMLLREAIHDNRLERYSTIIL
DEAHERTLATDILMGLLKDIAKRRSDLKIIVMSATLDAVKFQSYFNQAPLLKVPGRTFPV
ETFYTPEPEPDYLEAAIRTVLMIHQAEEPGDVLVFLTGEEEIEDACRKISIEADNLVANS
SAIGPLKCVPLYSSLPPQQQQRIFDPPPPPLTRNGPPGRKVVVSTNIAETSLTIDGIVYV
IDPGFSKQKIYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCFRLYTESSFVKELEE
QTYPEILRSNLASVVLELKKLGVDDLVHFDYMDPPAPETVMRALEMLNYLAAFDDDGNMT
PLGAIMAEFPLDPQLSKMLISSSEFKCSNEILSIAAMLSVPNPFLRPHNQRKEADDARAQ
FTHPDGDHLTLLNLFHAYKSQSDPSSWCWQNYVAYRAMLQADNVRSQLTRTMERFDLDLV
STDFNDKNYYTNIRMAITTGYFMQVAHKEGAKGSYTTRDGQVVGLHPSCGLDNNPEWVLY
NEFVLTTRNFIRICTEVKPEWLLDFAPMYFDMSTMPDGDTKRALQRIIIKREGKSKSGSH
EERREKKKRKKAEK
NT seq
2205 nt
NT seq
+upstream
nt +downstream
nt
atggctaccagaaacccttatctttctgagagcgctgccggagctctcgatggctttcgc
gctagaaaagtcactggtaaacaagtcgaagccgcaatggaccattctatcaatcccttc
actggacgtccttacacctctcaatacaaagaaattctttcaaaacgtaaagctttgccg
gtcttcaaacagatgccagagttttttgaaatgtacaatcgaaatcagtttgtagttatg
gaaggagaaacgggatcaggaaagacgactcagattccacaatatgcagtatacagcgat
ctacctcacatcaaaaataaacaaatcgcgtgtactcaacccagacgagtagcggcgatg
agcgtagctaaacgtgtagccgatgagatggacgtcaagttaggcgaacaagtgggttac
agtatcaggttcgaagactgtaccagtccatctaccattttgaaatacatgaccgatgga
atgttattaagagaagctattcacgataatcgactcgaaagatattcgacaatcattctt
gatgaagctcacgaacgaacccttgcaactgatattctgatgggcttgttgaaagacatt
gctaaacgtcgctctgacctcaagatcattgtcatgtccgcaacactcgatgcagtcaaa
tttcaatcctatttcaaccaagctcccttactgaaagttcctggtagaacgtttcctgtc
gagaccttctatacacctgagcctgaacctgactatctagaagccgcgatccggacagtg
ttgatgattcatcaagctgaagaacctggtgatgttttggtcttcttgaccggagaggag
gagattgaagatgcttgtcgcaaaatctcgattgaagccgataatctagtcgctaactcc
tctgccataggtcccctgaaatgcgtaccgctttattcatcccttccccctcagcaacaa
cagcgtatctttgatccacccccaccacctctcacccgaaatggaccaccgggtcgaaag
gttgtcgtctcgaccaacattgccgaaacttcattgaccatcgatgggattgtgtatgtg
atcgaccctggcttttcgaaacagaagatctataatcctcgtattcgagtcgagtcattg
cttgtctcccccatctctaaagcttccgctcaacaacgtgctggacgggccggtcgaacg
cgaccagggaaatgcttcaggttatacacggaatctagttttgtgaaagagttagaggaa
caaacctatcccgaaatccttcgttcaaatctggctagtgtggtcttagaattgaagaag
ttgggagtcgatgacttggtccatttcgattatatggacccacctgcacctgagacggtg
atgcgagctttggagatgttgaactatttggcggcgtttgatgatgatggaaacatgaca
ccgctaggtgccatcatggccgagtttcctctcgacccacaactttcgaaaatgttgatc
tcgagctcagagttcaagtgtagtaacgagattttgagcattgctgccatgttatcagtt
cccaatccgttcttgcgcccccataatcaacgtaaggaagccgatgacgctagggcacag
ttcacacatcctgatggtgatcatttgacgcttttgaaccttttccatgcctacaagagt
caaagtgacccgagtagctggtgttggcagaattatgtcgcttatcgagcgatgcttcaa
gctgataatgtgcgatcacagctcacacgaaccatggaacgatttgatctcgatctagtc
tcaaccgactttaatgataagaattattatactaatattcgaatggctatcactactgga
tactttatgcaagtggcacacaaagaaggtgctaagggaagttataccactcgggatggt
caagtggtggggcttcaccctagttgtggattagacaataatcctgaatgggtgctttac
aatgagtttgtattaactacacgaaactttattcgaatttgtacagaggtaaaacctgaa
tggctattggattttgctccaatgtattttgatatgtcaactatgccagatggagatact
aaacgtgcattacaaagaatcattatcaaacgagaaggcaaatcgaaatctggatcacat
gaagaaagaagagaaaagaaaaaacgaaagaaagctgagaagtag
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