Methanosarcina lacustris: MSLAZ_0015
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Entry
MSLAZ_0015 CDS
T03822
Name
(GenBank) Replication factor A (ssDNA-binding protein)
KO
K07466
replication factor A1
Organism
mls
Methanosarcina lacustris
Pathway
mls03030
DNA replication
mls03420
Nucleotide excision repair
mls03430
Mismatch repair
mls03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
mls00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
MSLAZ_0015
03420 Nucleotide excision repair
MSLAZ_0015
03430 Mismatch repair
MSLAZ_0015
03440 Homologous recombination
MSLAZ_0015
03460 Fanconi anemia pathway
MSLAZ_0015
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
mls03000
]
MSLAZ_0015
03032 DNA replication proteins [BR:
mls03032
]
MSLAZ_0015
03400 DNA repair and recombination proteins [BR:
mls03400
]
MSLAZ_0015
Transcription factors [BR:
mls03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
MSLAZ_0015
DNA replication proteins [BR:
mls03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
MSLAZ_0015
DNA repair and recombination proteins [BR:
mls03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
MSLAZ_0015
MMR (mismatch excision repair)
MSLAZ_0015
DSBR (double strand breaks repair)
HR (homologous recombination)
MSLAZ_0015
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_anti-codon
CDC24_OB3
Ssb-like_OB
REPA_OB_2
OB_MEIOB_N
TriTu
POT1PC
RecG_wedge
SHLD2_OB1
Motif
Other DBs
NCBI-ProteinID:
AKB73276
UniProt:
A0A0E3S035
LinkDB
All DBs
Position
complement(18086..19540)
Genome browser
AA seq
484 aa
AA seq
DB search
MTDIDTIYKKLSHVISREDFLQRTQEKVENMGGLCDEAMAAMLVANELGFSDASRDSVKI
ESITPESGPVNFVARIVSIFDIKEFTRNDGTIGRVGNLIVGDETGKVKLTLWDNMADLIK
NEKVKVGQTVQVSGHAKQGYSGVEINIGNNGVLTESEEEVDVVSASQNIKDIKDGMGDLN
LMGKVLEVSEVRTFQRKDGNSGRVGNLTIGDSTGTLRVTLWDEKTDFLTQIEYGDTVELI
NAYARENAFTQKVELQIGSRSIITKSEKKVEYKEEFTPVADIKADMNNINISGRVLDISE
VRAFEKKDGSPGRVGNILLGDSTGKIRLTLWDEKTDFLEEIDFDETVEVLNAYSRENTFS
QQVELSLGARGIIQKSEKKVEYREKFTDITNIVPGESYSVQGKVSEIGELREFEKEDGTE
SVVANLQLKDETGSIRLTLWGEQAYVIEDLDIDSEIQIIDAYAKYGLNEEIELSVGNRSR
VIIL
NT seq
1455 nt
NT seq
+upstream
nt +downstream
nt
atgaccgatattgacactatttataaaaagctcagccatgtcatcagtagagaagatttc
ctgcagcgcacacaggaaaaggtcgagaacatgggagggctttgtgatgaggcgatggct
gccatgctggttgccaatgaactgggattctcggatgcgagcagggacagcgtgaaaata
gaaagtattacacctgagagcggacctgttaattttgttgcaagaattgtttcgattttt
gatatcaaggagtttacccggaacgatggcaccataggtagagttggaaatctgattgtc
ggagacgaaaccggaaaagtaaagttaaccctgtgggacaatatggcagacctgattaaa
aacgaaaaagtaaaggtaggacaaaccgtccaggtcagcggccatgcaaagcagggctat
tccggcgtggaaattaacatcggcaataatggagtcctgaccgaaagtgaagaagaagtt
gatgttgtttcggccagccagaatataaaggacataaaagatggaatgggagacctcaac
cttatgggaaaagtgcttgaggtttctgaagtaaggaccttccagcgcaaagacggcaat
agcgggagagtgggaaacctgacgattggggattccacaggcacactcagggtgacgcta
tgggacgaaaaaaccgattttttaacccagattgagtatggggacactgttgagctgatc
aatgcttacgcccgtgaaaatgcctttacgcagaaagtagagttgcaaataggaagccgg
agcataatcacgaaaagcgaaaagaaagtagaatataaagaagagtttacccctgttgca
gatataaaagctgatatgaataatatcaatatttcaggaagggtacttgacatctcagaa
gtccgggccttcgagaaaaaagacggctctcccggcagggttggaaacatcctcctgggc
gattccacaggcaaaataaggcttacactctgggacgaaaaaaccgattttcttgaggag
attgattttgatgaaacagtggaggttctcaatgcatattcccgggaaaacactttcagc
cagcaggtggaacttagcctgggagccagagggataattcagaaaagtgaaaaaaaggtt
gagtacagagagaaatttactgacatcaccaacattgtcccgggagaaagttattctgtc
cagggaaaagtttccgaaatcggagaactaagagagtttgagaaggaagatggaaccgaa
agtgtggtagcaaacctgcagcttaaggacgaaacaggcagtatccggctaactctctgg
ggagaacaggcctatgtgatagaggacctggatatcgactccgagatccagatcattgat
gcttatgccaagtatggattgaacgaagaaatagaacttagtgttgggaacaggagcaga
gtgattattctctaa
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