Methanosarcina lacustris: MSLAZ_0344
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Entry
MSLAZ_0344 CDS
T03822
Name
(GenBank) Transcription initiation factor B
KO
K03124
transcription initiation factor TFIIB
Organism
mls
Methanosarcina lacustris
Pathway
mls03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
mls00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
MSLAZ_0344
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mls03021
]
MSLAZ_0344
Transcription machinery [BR:
mls03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIB
MSLAZ_0344
Prokaryotic type
Archaeal type
TFB
MSLAZ_0344
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TFIIB
Zn_Ribbon_TF
Lar_restr_allev
Cas12f1-like_TNB
Sigma70_r4
Zn_ribbon_LysW
Zn_ribbon_IS1595
Trm112p
DUF7577
HTH_Tnp_ISL3
HTH_AsnC-type
Zn_ribbon_PaaD
BRF2-like_C_cyclin_rpt
Zn_ribbon_SprT
A2L_zn_ribbon
DZR
Ribosomal_S27e
Motif
Other DBs
NCBI-ProteinID:
AKB73605
UniProt:
A0A0E3WRT9
LinkDB
All DBs
Position
436562..437575
Genome browser
AA seq
337 aa
AA seq
DB search
MVEVERVRYSDTLEREKIRAMIKARKEKQKEQNFENEKAVCPECGSRNLVHDYERAELVC
GDCGLVVDADFVDEGPEWRAFDHDQRMKRSRVGAPMTYTIHDKGLSTMIDWRNRDSYGKS
ISSKNRAQLYRLRKWQRRIRVSNATERNLAFALSELDRMASALGLPRTVRETAAVVYRKA
VDKNLIRGRSIEGVAAAALYAACRQCSVPRTLDEIEEVSRVSRKEIGRTYRFISRELALK
LMPTSPIDYVPRFCSGLNLKGEVQSKSVEILRQASEKELTSGRGPTGVAAAAIYIASILC
GERRTQREVADVAGVTEVTIRNRYKELAEELDIEIIL
NT seq
1014 nt
NT seq
+upstream
nt +downstream
nt
atggtagaagtcgaaagagttcgctattcggacactcttgaaagagaaaaaatacgtgcc
atgatcaaagctcgcaaagaaaagcaaaaagagcaaaattttgagaacgaaaaggccgtg
tgtccggaatgcggcagcaggaaccttgttcacgactacgagcgggcagagcttgtttgc
ggtgactgcggacttgtcgtcgatgccgattttgtggatgaggggcccgaatggcgagct
ttcgatcacgatcagcgcatgaagcgttctcgtgtgggtgcgcccatgacttatacaatc
cacgacaaagggctttccacaatgatcgactggaggaatcgtgattcctacggaaagtct
atctcctccaaaaaccgtgctcaactatatcgtttaagaaaatggcagcgtaggattcga
gtaagtaacgcaactgaaagaaacctggcttttgccctttccgaactggacagaatggct
tctgctctgggtctccccaggactgtcagggaaacagcggcagtcgtctacagaaaagct
gtggacaaaaatcttatccgcggtcgcagtattgaaggtgtagccgcagccgccctttat
gctgcctgtcgccagtgcagtgttccgaggactcttgatgagattgaagaggtttcaagg
gttagcaggaaagaaatcggaagaacttaccgtttcatttcccgagaacttgccttaaaa
ctcatgccaacttcccccatcgactatgtcccgaggttctgctccgggcttaacctgaag
ggggaggtccagtcaaagagtgttgaaatcctcaggcaggcatccgaaaaagaacttaca
agcggaagagggccaacgggagttgcggcagctgcaatatatatcgcatcaattctctgc
ggtgagcggaggactcagcgggaagttgcagatgttgccggggttacggaagttaccatc
agaaacaggtataaggaactggcagaagaactggatattgagattatcctttaa
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