Methanosarcina lacustris: MSLAZ_0589
Help
Entry
MSLAZ_0589 CDS
T03822
Name
(GenBank) Cold-shock DEAD-box protein A
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
mls
Methanosarcina lacustris
Pathway
mls03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mls00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MSLAZ_0589
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mls03019
]
MSLAZ_0589
03009 Ribosome biogenesis [BR:
mls03009
]
MSLAZ_0589
Enzymes [BR:
mls01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
MSLAZ_0589
Messenger RNA biogenesis [BR:
mls03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
MSLAZ_0589
Ribosome biogenesis [BR:
mls03009
]
Prokaryotic type
rRNA helicases
MSLAZ_0589
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
ERCC3_RAD25_C
CMS1
DeaD_dimer
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
AKB73850
UniProt:
A0A0E3WSY7
LinkDB
All DBs
Position
complement(723080..724873)
Genome browser
AA seq
597 aa
AA seq
DB search
MEKLAKFKALGLSDSMLKAFKKKGFEEPTPIQEKVIPLFMKGESDIIGQAQTGTGKTVAF
GAPIIEKISEKSGHVQAIILTPTRELAIQISEELNSIKGDKKLSIVPIYGGQSMTQQLRM
LKIGVDIVVGTPGRVIDHINRKSLNLEKISYFVLDEADEMLNMGFIDDIKEILKATGPDK
RMLFFSATMPKTILGIVKKYMRNYEHITIANEEITENLTEQIYFEVRESDKFEALSRIID
IEDEFYGLVFCRTKIDTSQLAQKLSDRGYLADALHGDISQQEREKILNKFRKQKIHILAA
TDVAARGIDIIDLTHVINYSLPQDPESYVHRIGRTGRAGKQGTAITFVTSSEFRRLTYIQ
KTSKSDMKKGRIPGIKDVIKAKRTRVKAELDETIKTEEYGDCLEMSTRLLEEYPAEKILP
AILKYAFKEKFDESMYTEISDGSSYVDRKGKTRLFIAMGKADGMTPEKLSDFIQQELGDS
ELNVRDAEIFPHFSFISIPFAQAEALLGIFKNKRKGSKPFVELAQKSRGGSTRGSNGGSS
SGGSRSNGGSRSSGGSRGSGGSRGSGSSRGSGSSRSSDSSRSSDSSRSSGSSRNVKN
NT seq
1794 nt
NT seq
+upstream
nt +downstream
nt
atggaaaaattagcaaaatttaaagcgcttgggctctcggacagtatgttgaaagccttc
aaaaagaaagggtttgaagaaccaaccccaattcaggaaaaggtaatcccgctttttatg
aaaggagaatctgacattatagggcaggctcagacagggacaggaaaaacagtagctttt
ggagccccaatcatagagaaaatttctgagaaatcaggacatgttcaggcaataatcctg
acccctacaagggaactcgcaatccagatttcagaagagcttaactccataaaaggagac
aaaaaactgtccattgtccctatatacggcggacagtccatgacccagcagcttcgcatg
ctgaaaatcggcgtggacattgtcgtagggacaccgggaagggtcatcgaccacattaac
agaaagagcctaaacctcgaaaagatatcgtatttcgtacttgacgaagctgacgaaatg
ctgaacatgggctttattgacgacataaaggagatcttaaaggcaaccggccctgataaa
agaatgcttttcttttcagccacaatgccaaaaacaatccttggaatcgtcaagaagtac
atgcggaactacgagcatattacaattgcgaacgaggaaattacagaaaacctgaccgaa
cagatctattttgaggttcgggaaagcgacaagtttgaagccctcagtagaatcatcgac
attgaagacgaattttacgggctcgttttctgccggacaaagatcgacaccagccagctt
gcccagaaactcagcgacaggggttatttagctgatgctcttcacggagacatctcccag
caagagcgggaaaaaatcctgaataagttcaggaaacagaaaatacacatcctcgcagca
accgatgttgcagcaagaggcatcgatatcatagacctgacccatgtcatcaactattcc
ctgccccaggacccagaatcctatgtgcacaggataggaaggacaggaagggcaggcaaa
cagggaactgctatcacctttgttacatcctcggaattcaggcggctcacttacatacag
aagacttcaaagtccgatatgaagaaaggtcgcatccctgggataaaagatgtaataaaa
gccaaaaggacgagagtaaaagccgaactcgatgagaccataaagacagaagaatatggg
gactgccttgagatgagcacaaggctccttgaagaataccccgcagaaaagatcctgcct
gccattttaaagtacgccttcaaggaaaagttcgacgagagcatgtacacggaaatttcc
gatggcagctcctacgtcgacaggaaaggaaaaaccaggctattcatagccatgggaaaa
gccgatggtatgaccccggaaaaactgtcagatttcatacagcaggaactcggggacagc
gaactgaatgtgagggatgcagagattttcccccacttttcattcatatccatccccttt
gcccaggctgaagccctgctcggcatcttcaaaaacaaaagaaaaggaagtaaacctttc
gtggaacttgcccagaaatccaggggaggaagcacaagaggctcaaacggggggagcagc
agcggtggctcaagaagcaacggtggctcaagaagcagcggtggctcaagaggcagcggt
ggctcaagaggcagcggcagctcaagaggcagcggcagctcaagaagtagcgacagttca
agaagtagcgacagctcaagaagcagtggcagctcaagaaatgtgaaaaactaa
DBGET
integrated database retrieval system
