Methanosarcina lacustris: MSLAZ_1569
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Entry
MSLAZ_1569 CDS
T03822
Name
(GenBank) putative ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
mls
Methanosarcina lacustris
Pathway
mls03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mls00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MSLAZ_1569
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mls03019
]
MSLAZ_1569
03009 Ribosome biogenesis [BR:
mls03009
]
MSLAZ_1569
Enzymes [BR:
mls01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
MSLAZ_1569
Messenger RNA biogenesis [BR:
mls03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
MSLAZ_1569
Ribosome biogenesis [BR:
mls03009
]
Prokaryotic type
rRNA helicases
MSLAZ_1569
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
ERCC3_RAD25_C
AAA_19
P-loop_SecA
V-ATPase_H_C
Utp25_C
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
AKB74830
UniProt:
A0A0E3WSJ8
LinkDB
All DBs
Position
1987289..1988500
Genome browser
AA seq
403 aa
AA seq
DB search
MNNFKKLGLSNAVLKSIDEHGFESPSAIQEKSIPLILAGEDVIAGAATGSGKTLAFASGI
LQNSEKGKGIQALILTPTRELAEQVANSFREFSKYDPLNIVSIYGGVGINPQIKELKNAE
VVVGTPGRLLDHISRNTIKFNNVKTLAIDEADHMFDMGFKVDVEKIIKECPQKRQTLLFS
ATITKDVVQLSRKYMKNPVRVSVESYIDPQKLNQVVYKVQDEMKLSLLVYLLQNEKSNLG
MVFCNTKRNTDKVAKNLRKSGINAVAIHGGLRQNERTRIMEKFHSGNIGVLVCTDVAGRG
LDIQGVSHVYNYDIPRESKQYIHRIGRTARAGAEGKAINILSKNDHANFMSVLKDNDVNI
KEHALPALKKIVIERPDIKLPKPVNRMNSPSRKGPQNTRHRNY
NT seq
1212 nt
NT seq
+upstream
nt +downstream
nt
atgaataattttaaaaaactaggtctcagtaatgctgttttgaaatcaatagatgaacat
ggctttgaaagcccttcagcaatacaggaaaaatcaattcccctaatacttgctggggaa
gatgttatagccggagccgcaacaggttccggaaaaacactcgcatttgcttccggcata
ttacaaaattccgaaaaaggaaaaggaattcaggctttgatcctgacccctacaagagaa
ctggcggagcaggtggcaaattcgttcagggaattctcaaaatacgacccgttaaatatc
gtatctatctatggcggtgtagggatcaatccacaaattaaagaattaaagaatgccgag
gttgttgtgggaacacccggtaggctactcgatcatatcagtagaaataccatcaaattc
aataatgtgaaaacccttgccattgatgaggcagaccatatgtttgatatgggattcaaa
gtggatgtagaaaaaattatcaaggaatgtcctcaaaaaaggcagacccttttgttctct
gcaaccattacaaaagatgttgtccagctttcccgcaagtacatgaaaaacccggttcga
gtatcagtagagtcttatatcgacccgcaaaaattgaatcaggttgtttataaagtacag
gatgaaatgaaattatctctgctcgtttatcttctacaaaatgagaagtcaaacctcggg
atggttttctgcaacacaaaaagaaacactgacaaagtcgcaaaaaacctgagaaaatca
ggtatcaatgccgtggcaattcatggcggattgagacagaacgaacgaactcgcataatg
gaaaaattccattccggaaacataggcgtccttgtatgcacagatgtagccggaagagga
cttgatatacagggtgtttcccatgtttacaattatgatattcccagggagagtaaacag
tatattcacaggattggaagaactgcacgagcaggagcagaaggaaaagcgataaatatc
ctttccaaaaatgaccatgcgaatttcatgagtgtgttgaaagacaatgatgtaaatatt
aaggaacatgcactacctgctctgaagaagattgtaattgaaagaccggatataaaattg
ccaaagccggtaaataggatgaacagcccctccagaaaaggtccgcaaaataccaggcac
agaaactattag
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