Methanosarcina lacustris: MSLAZ_1805
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Entry
MSLAZ_1805 CDS
T03822
Name
(GenBank) Ribonuclease PH
KO
K11600
exosome complex component RRP41
Organism
mls
Methanosarcina lacustris
Pathway
mls03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mls00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MSLAZ_1805
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mls03019
]
MSLAZ_1805
Messenger RNA biogenesis [BR:
mls03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
MSLAZ_1805
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
MSLAZ_1805
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-ProteinID:
AKB75066
UniProt:
A0A0E3S4A3
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All DBs
Position
2317784..2319241
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AA seq
485 aa
AA seq
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MSDKPDKLITDDGLRLDGRRADEIRPMKIEIGVLSRADGSCYLEWGRNKILVGVFGPREA
HPRRSQRADSAVIRYRYNMASFSTEDRARPGHSRRSIEISKVSREAFEPVIMAELFPKTA
IDIFVEVLQADAGTRTAAINAASIALADAGIPMKGLITSCAFGKVDGQIVLDLSKDEDNY
GEADFPVAMTQDGEITLVQMDGHLTPEEIKKGMELAKKGCKEILEIQQEVLRKKFETPVE
DTVEKAAEIEKEGKKEESVPAPVSAPEAAVEEAVEEIAKFGAEVSEDPSIADVLSSEVIP
DFEEELEEDIEVEFEEEEDFEEEKEDDESEEEEFEAESEDDLGEDSGEELEEEEFGPEAL
EEKEALDDEKEFEASFEGTPELKEFEEIAARLEKEAVSIEAEEEIVLGSEVEEFSKEELS
LEEESEVEETSASEEIIEPETEVEPEEASTEAVEAEEEPEEEVSEGPWKVVKDPSEAGNR
GEKDE
NT seq
1458 nt
NT seq
+upstream
nt +downstream
nt
atgagtgataaacctgataaattaatcactgacgatgggttgcgccttgacgggagacgt
gcggacgaaataaggcccatgaaaattgagatcggcgtactttcgcgagccgacggttca
tgttatcttgaatggggcaggaataagatcctggtaggtgtgttcggaccccgggaagct
catccccgccgcagccagcgcgcagattcggcagttatccgttacaggtataatatggca
tcattctccacggaagaccgtgctcgtccggggcacagtcggcggagcattgaaatctca
aaggtttccagggaagctttcgaacctgtgattatggctgagctgtttccaaagacagca
attgatattttcgtggaagtgcttcaggccgatgcagggacaaggacagcagcaattaat
gctgcaagcatagctcttgcagatgccggaattcccatgaagggccttattacctcctgt
gctttcggaaaggtcgacgggcagattgtgcttgacctcagtaaggatgaggataactac
ggtgaggctgacttccctgtagcaatgacccaggacggagaaattactcttgtccagatg
gacgggcaccttactccggaagaaattaagaaaggtatggagctcgcaaagaaagggtgc
aaggagatccttgaaatccagcaggaagtccttagaaagaagtttgagactcctgttgag
gatactgtggaaaaagctgcagaaattgaaaaggaaggcaaaaaggaagagtccgtaccc
gctcccgtgtctgctccggaagcagcagttgaagaggctgttgaggaaattgcaaaattc
ggagcagaggtgtcagaagacccatctatagccgatgtcctttccagcgaggtaattcct
gatttcgaagaagagcttgaggaagatattgaagtagagttcgaagaggaagaagatttc
gaagaagaaaaagaggacgacgaatccgaagaagaggaatttgaggctgaatctgaagat
gatttaggagaagattcaggagaagaactcgaagaagaggaatttggaccggaagctctt
gaagaaaaggaagctcttgacgatgaaaaggaatttgaagcctcttttgaaggtactccc
gaactcaaagagtttgaagaaattgcagccaggcttgagaaagaagctgtttccatagaa
gccgaagaggaaatcgtactcgggtctgaagttgaggaattttccaaagaagaactttcc
cttgaagaagaatctgaagtggaggaaacctctgcttcagaagaaattattgagcctgaa
acagaggtagaacccgaggaagcttccactgaagcagtagaggcagaagaagagcctgaa
gaagaagtatcagaaggtccctggaaggtagtaaaagacccctctgaagccggaaacaga
ggtgaaaaagatgagtga
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