KEGG   Methanosarcina lacustris: MSLAZ_1805
Entry
MSLAZ_1805        CDS       T03822                                 
Name
(GenBank) Ribonuclease PH
  KO
K11600  exosome complex component RRP41
Organism
mls  Methanosarcina lacustris
Pathway
mls03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:mls00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    MSLAZ_1805
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:mls03019]
    MSLAZ_1805
Messenger RNA biogenesis [BR:mls03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Core exosome factors
     MSLAZ_1805
 Prokaryotic type
  Archeal mRNA degradation factors
   Exosome components
    Cofactors
     MSLAZ_1805
SSDB
Motif
Pfam: RNase_PH RNase_PH_C
Other DBs
NCBI-ProteinID: AKB75066
UniProt: A0A0E3S4A3
LinkDB
Position
2317784..2319241
AA seq 485 aa
MSDKPDKLITDDGLRLDGRRADEIRPMKIEIGVLSRADGSCYLEWGRNKILVGVFGPREA
HPRRSQRADSAVIRYRYNMASFSTEDRARPGHSRRSIEISKVSREAFEPVIMAELFPKTA
IDIFVEVLQADAGTRTAAINAASIALADAGIPMKGLITSCAFGKVDGQIVLDLSKDEDNY
GEADFPVAMTQDGEITLVQMDGHLTPEEIKKGMELAKKGCKEILEIQQEVLRKKFETPVE
DTVEKAAEIEKEGKKEESVPAPVSAPEAAVEEAVEEIAKFGAEVSEDPSIADVLSSEVIP
DFEEELEEDIEVEFEEEEDFEEEKEDDESEEEEFEAESEDDLGEDSGEELEEEEFGPEAL
EEKEALDDEKEFEASFEGTPELKEFEEIAARLEKEAVSIEAEEEIVLGSEVEEFSKEELS
LEEESEVEETSASEEIIEPETEVEPEEASTEAVEAEEEPEEEVSEGPWKVVKDPSEAGNR
GEKDE
NT seq 1458 nt   +upstreamnt  +downstreamnt
atgagtgataaacctgataaattaatcactgacgatgggttgcgccttgacgggagacgt
gcggacgaaataaggcccatgaaaattgagatcggcgtactttcgcgagccgacggttca
tgttatcttgaatggggcaggaataagatcctggtaggtgtgttcggaccccgggaagct
catccccgccgcagccagcgcgcagattcggcagttatccgttacaggtataatatggca
tcattctccacggaagaccgtgctcgtccggggcacagtcggcggagcattgaaatctca
aaggtttccagggaagctttcgaacctgtgattatggctgagctgtttccaaagacagca
attgatattttcgtggaagtgcttcaggccgatgcagggacaaggacagcagcaattaat
gctgcaagcatagctcttgcagatgccggaattcccatgaagggccttattacctcctgt
gctttcggaaaggtcgacgggcagattgtgcttgacctcagtaaggatgaggataactac
ggtgaggctgacttccctgtagcaatgacccaggacggagaaattactcttgtccagatg
gacgggcaccttactccggaagaaattaagaaaggtatggagctcgcaaagaaagggtgc
aaggagatccttgaaatccagcaggaagtccttagaaagaagtttgagactcctgttgag
gatactgtggaaaaagctgcagaaattgaaaaggaaggcaaaaaggaagagtccgtaccc
gctcccgtgtctgctccggaagcagcagttgaagaggctgttgaggaaattgcaaaattc
ggagcagaggtgtcagaagacccatctatagccgatgtcctttccagcgaggtaattcct
gatttcgaagaagagcttgaggaagatattgaagtagagttcgaagaggaagaagatttc
gaagaagaaaaagaggacgacgaatccgaagaagaggaatttgaggctgaatctgaagat
gatttaggagaagattcaggagaagaactcgaagaagaggaatttggaccggaagctctt
gaagaaaaggaagctcttgacgatgaaaaggaatttgaagcctcttttgaaggtactccc
gaactcaaagagtttgaagaaattgcagccaggcttgagaaagaagctgtttccatagaa
gccgaagaggaaatcgtactcgggtctgaagttgaggaattttccaaagaagaactttcc
cttgaagaagaatctgaagtggaggaaacctctgcttcagaagaaattattgagcctgaa
acagaggtagaacccgaggaagcttccactgaagcagtagaggcagaagaagagcctgaa
gaagaagtatcagaaggtccctggaaggtagtaaaagacccctctgaagccggaaacaga
ggtgaaaaagatgagtga

DBGET integrated database retrieval system