Methanosarcina lacustris: MSLAZ_2307
Help
Entry
MSLAZ_2307 CDS
T03822
Name
(GenBank) tRNA-intron endonuclease
KO
K01170
tRNA-intron endonuclease, archaea type [EC:
4.6.1.16
]
Organism
mls
Methanosarcina lacustris
Brite
KEGG Orthology (KO) [BR:
mls00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
mls03016
]
MSLAZ_2307
Enzymes [BR:
mls01000
]
4. Lyases
4.6 Phosphorus-oxygen lyases
4.6.1 Phosphorus-oxygen lyases (only sub-subclass identified to date)
4.6.1.16 tRNA-intron lyase
MSLAZ_2307
Transfer RNA biogenesis [BR:
mls03016
]
Prokaryotic type
tRNA spricing factors
tRNA splicing endonucleases
MSLAZ_2307
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_int_endo
tRNA_int_endo_N
Sen15
Motif
Other DBs
NCBI-ProteinID:
AKB75568
UniProt:
A0A0E3S8U8
LinkDB
All DBs
Position
3004497..3005549
Genome browser
AA seq
350 aa
AA seq
DB search
MKTQLKGDRVLAGKDAVAELYKTSYFGRPRDDGLELSLVEAAYLHFRGKVEIELEGKLLD
FRAFFEQASLRQPNFELKYIVYKDLKERGYYVQPSTVDFRVYPRGSHPGKSAARIFVHVL
SERQLLSVKLLQDSVSSAENVHKQFILAVVDEESDLTFYEIKTATPEGEMPEPFPAVKTD
ATFLEDRVIAWDAEASGALYTRGFYGKMLDPERLQLSLVESLYLFSRGIIVVRDRKGKVF
SFGEFVEKASEIEGSFLRKYLAYKALRDSGHVVKTGFKFGTHFRVYRKVEFIEKIPHSEY
LVNVIPADYEFRLPVMSGAVRLANSVRKRMLFAVEKGDGVEYLDIGRVKM
NT seq
1053 nt
NT seq
+upstream
nt +downstream
nt
ttgaaaacacaacttaaaggggaccgggtccttgccggaaaggacgcggtagccgaactt
tacaaaacaagttatttcgggcgtcccagggatgacgggcttgaactctcccttgtggaa
gccgcataccttcatttcaggggaaaagtcgagattgagcttgaaggcaaactgcttgat
ttcagggctttttttgagcaggcttctctgagacagccgaatttcgaactgaagtatatc
gtttataaagacctaaaagagcggggatattatgtccagccttcaactgtagacttccgg
gtataccctagaggcagccatccaggaaaaagcgcggcaagaatttttgtccatgtcctg
tctgaaaggcagcttctttctgtaaagcttttgcaggattcggtctcctcggcagaaaac
gtgcacaagcagtttatcctggctgtggtggatgaagaaagtgacctcaccttctacgag
attaaaaccgctacccctgaaggggagatgcctgagcccttccctgcagtcaaaaccgat
gcaactttcctcgaagacagggtaatagcctgggacgctgaggcttccggggcactgtat
accagaggtttctacgggaaaatgcttgaccctgaaaggctgcagctctcccttgtagag
tccctctatctcttttcgagagggattatagttgtcagggacaggaaaggaaaggtcttt
tcattcggagagtttgttgagaaagcctcggaaatcgaaggttctttcctgcggaaatac
ctcgcatataaagctctgcgggactcaggacatgtggtcaagacaggttttaagttcggg
acccatttcagggtctacaggaaggtcgaattcatagaaaaaatacctcattccgagtat
cttgtaaacgttatccctgcagattacgagttcaggcttccggttatgtccggggctgtc
cggcttgcaaacagcgtgcgcaagcgaatgctctttgcagtcgagaaaggggacggagtc
gagtacctggatattggcagagtcaaaatgtga
DBGET
integrated database retrieval system
