Flagellimonas lutaonensis: VC82_1323
Help
Entry
VC82_1323 CDS
T03884
Name
(GenBank) Ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
mlt
Flagellimonas lutaonensis
Pathway
mlt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mlt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
VC82_1323
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mlt03019
]
VC82_1323
03016 Transfer RNA biogenesis [BR:
mlt03016
]
VC82_1323
Enzymes [BR:
mlt01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
VC82_1323
Messenger RNA biogenesis [BR:
mlt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
VC82_1323
Transfer RNA biogenesis [BR:
mlt03016
]
Prokaryotic type
tRNA degradation factors
VC82_1323
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
OB_Dis3
S1
S1CSD-TOTE-2
OB_HELZ2
OB_RNR_1st
AbiEi_4
HTH_23
Motif
Other DBs
NCBI-ProteinID:
AKA34952
UniProt:
A0A0D5YRP4
LinkDB
All DBs
Position
1409744..1411933
Genome browser
AA seq
729 aa
AA seq
DB search
MSKKKKRATSQRKNEITKGIFQVLEDEPSKGFNYKQIAARLGIDDATGRNILISRLAQLK
SKERIVEVDRGKYKKKSSGKKVYEGILDVTMNGNAYVVVEELQDDIFVPNHKLNKGLHGD
IVEVAVQQKGKGKKLEGKVVGIVKRTKDTYVGLLEKHKTFAFVRPTESKMYTDVFVPIDK
LNKAQDGDKVLVKLGAWPKDADSPYGEVIKVLGKPGEHHTEIHSILAEYGLPYEFPYEVE
EFANKLDTSIKKGEIAKRRDMRDVLTFTIDPKDAKDFDDALSVQKLENGHYEIGIHIADV
SHYVQPGTILDDEAYERATSVYLVDRVVPMLPEVLSNNACSLRPNEEKYTFSAIFEIDGQ
ARVQKQWFGRTVINSNERFAYEEAQHIIETKQPCIPKEISIRNRSYKVSNEVVEAILTLN
SLAETMRERRMEKGAISFDKIEVRFNLDKDNEPESVYFKEAKEANKLIEEFMLLANRKVA
EFIGKQKPKKTFVYRVHDEPNEEKLMALNGVISKFGHQINLKDKKSISASLNKLLEDVKG
KKEQNLVDTLAIRSMSKAIYTTDNIGHYGLAFDYYTHFTSPIRRYPDVMVHRLLQHYLDG
GKSPQEGPYEEKCRHSSEMELLASSAERDSIKYMQIKFMEKHRGQEFLGVISGVTEWGIY
VEIIENKCEGMVRIRDIKDDYYTFDEREYAIIGERTGKTYQLGDEVYVMVKDTDLIKRHL
DFSLIGKKE
NT seq
2190 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaaaaagaagaaaagggcgaccagccaacgcaaaaatgagataacaaaaggaatc
tttcaggttctagaggatgagccctctaaagggttcaactacaaacaaattgctgctcgc
ttgggtatagatgatgctacaggaagaaatattctcatcagtaggctcgcacaactaaaa
agcaaagaacgtattgttgaggttgataggggcaagtacaaaaagaagtcttcggggaaa
aaagtgtacgagggcatccttgatgttaccatgaacggaaacgcctatgtggtggtagaa
gagctgcaagacgatatttttgtgcccaaccataaactgaacaagggactccacggcgat
atcgtagaagtagcggtacaacagaaaggcaaaggcaaaaaattggaaggcaaggtggtc
ggcatcgtcaagagaacgaaagacacctatgtgggcctacttgaaaaacacaagaccttt
gcctttgtaagacccactgaatcaaagatgtacaccgatgtgttcgtgcccatcgataaa
ttgaacaaggcacaggatggtgacaaggtattggtaaaattgggcgcttggccaaaagac
gccgattcaccgtacggcgaggtcataaaagtgctgggaaagccaggggagcaccataca
gagatacactctattttggctgagtacgggctgccctatgaatttccgtacgaagtggaa
gaattcgccaacaaactggatacttccatcaaaaaaggggaaatagccaaaagaagggat
atgcgcgatgtgttgacctttaccatagatcccaaagacgccaaagattttgatgatgca
ttgtccgtgcaaaaattggaaaatggccattatgaaataggcatccatatagccgatgtg
tcgcattacgtacagcccggaacaatattggacgatgaagcctacgaaagggcaacttct
gtttatttggtagaccgtgtggtaccgatgttgccagaggtattgtcgaacaatgcctgt
tctctgcggcccaacgaagagaagtacaccttttcagccatttttgaaatcgatgggcag
gcccgggtacaaaagcagtggttcggtagaacggtcatcaactcaaacgaacgctttgcc
tatgaagaagcgcagcatattattgagaccaaacaaccgtgcatcccaaaggaaatatcc
atacgaaacagatcctacaaggtttcaaatgaagttgtggaagccattctcaccttgaac
agcctagctgagaccatgcgtgagcgccgaatggaaaagggcgccatttctttcgataag
atagaggtaaggttcaatttggacaaggacaatgaacctgaaagtgtttatttcaaggaa
gcaaaagaggccaacaaactcattgaagaatttatgctgttggccaacagaaaagtagcc
gagttcatcgggaaacaaaaacccaagaaaacgtttgtatatagggtgcacgatgaacca
aacgaagaaaaattaatggccctgaacggggttatttcaaaattcggacaccaaatcaac
ctcaaggataaaaagtccatcagcgcctctctaaacaagctcttagaggatgtaaagggc
aaaaaagaacagaatttggtagacaccttggcaatacgcagtatgagcaaggccatctac
acaaccgacaatattgggcactatggcctggcatttgattactatacccatttcacctcg
ccgatcagacgctatcccgatgtaatggtgcaccgcttactgcaacattatttggatggg
ggaaaatcaccacaagaagggccctatgaagaaaagtgcaggcactcttcagaaatggaa
ctattggcgagcagtgccgaacgcgattccataaagtacatgcagatcaagtttatggaa
aagcaccgtgggcaagagttcttgggtgttatatcgggggtaaccgagtggggcatctat
gtagagattatcgaaaataaatgtgagggcatggtgcgcattcgcgacatcaaagatgat
tattatacctttgatgagagagagtacgccattatcggcgaaagaacaggtaaaacttac
caattaggtgacgaggtctacgtaatggtaaaagataccgatttgatcaaaagacatttg
gatttttcccttatcgggaaaaaagaatga
DBGET
integrated database retrieval system
