Flagellimonas lutaonensis: VC82_40
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Entry
VC82_40 CDS
T03884
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
mlt
Flagellimonas lutaonensis
Pathway
mlt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mlt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
VC82_40
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mlt03019
]
VC82_40
03009 Ribosome biogenesis [BR:
mlt03009
]
VC82_40
Enzymes [BR:
mlt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
VC82_40
Messenger RNA biogenesis [BR:
mlt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
VC82_40
Ribosome biogenesis [BR:
mlt03009
]
Prokaryotic type
rRNA helicases
VC82_40
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
Helicase_helical
DbpA
ResIII
AAA_22
Cas3-like_C_2
DUF3194
Motif
Other DBs
NCBI-ProteinID:
AKA33732
UniProt:
A0A0D5YNF0
LinkDB
All DBs
Position
38794..40524
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AA seq
576 aa
AA seq
DB search
MTPFETLGLDKPLLNAISDLGFKTPSEVQEKAIPVLLSDETDLVALAQTGTGKTAAFGFP
LIQKLQADSRTTQGLILSPTRELCLQITNEMQQYAKYIKGLNIVAIYGGASITEQAKQVR
RGAQIVVATPGRMKDMIQRGIVDISKIDYCILDEADEMLNMGFYEDIKDILSNTPKEKST
WLFSATMPKEVATIAKKFMHQPVEITVGERNVGATTVQHEYYLVGGRDRYAALKRLADAN
PGIFSVVFCRTKRDTQKVAEKLIEDGYNAGALHGDLSQNQRDLVMNAFRKNQIQMLVATD
VAARGIDVDDITHVINYQLPDEIETYTHRSGRTGRAGKSGISMVIVTRSELRKIKSIEKK
IKQQFIEKKIPTGIEICEIQLYHLANNIKNTAINPEIEAYLPAINDVLQGIDRDELIRKV
VSVEFSRFYNYYSKTRDLNSGVGSSEGNRREGKSAEGTVRYFINIGERDGYDWMSLKDFL
RDTLGLDKDDVYRVDTKDSFSFFNTDDTMTPLVLETFKDFQVNGRYINVEVSKSPGRGSG
RKKDKNRGRRNDKRSSFKEGRGKSRNRKNKKKQGFF
NT seq
1731 nt
NT seq
+upstream
nt +downstream
nt
atgacaccatttgaaacattggggttagacaaacccttattgaatgccatttccgatctc
ggatttaaaaccccctcagaagtacaggaaaaagcaatcccggtcttattgtccgatgaa
accgatttagtggccctggcccaaaccggtacgggaaagaccgctgcctttggctttccg
cttatccaaaaattacaagccgatagtcgaacgacccaaggtctgatattatcgcccacc
cgtgagttgtgcctgcagataaccaatgaaatgcagcagtatgccaaatacataaaaggc
ctcaatatcgtggccatttatgggggtgccagcattaccgagcaggccaagcaggtacgt
aggggcgcccaaattgtggtcgccacccccggacgtatgaaagatatgatccaacgaggc
attgttgatatatcaaaaattgactattgtatactcgatgaggccgacgaaatgttgaat
atgggattttacgaggatataaaagatattctctcgaacaccccaaaagaaaaatcaact
tggttgttttcggctaccatgcccaaagaagtggcaaccattgccaaaaaatttatgcac
cagcccgtggaaatcacggtcggagagagaaatgtgggtgccaccacggtgcagcacgaa
tactatttggtgggcggtcgtgaccgctacgccgcattgaaacgtttggccgatgccaac
cccggaattttctcggtggtcttctgccgtaccaagcgcgacacacaaaaagtggccgaa
aagctgatagaagatggctacaatgccggtgccctgcatggcgacctcagccaaaaccaa
cgcgatttggttatgaacgcctttcgtaaaaaccaaatacaaatgttggttgccacagat
gtggccgcaaggggcatcgatgttgacgacattacgcacgtgatcaactatcagcttccc
gatgagatagaaacctatacacaccgtagtggaagaactggaagggccggtaaatccggt
atttcaatggtcatcgttaccagaagcgagcttcgcaagatcaaatccattgaaaagaaa
atcaaacaacagttcatagaaaagaaaattccaacagggatcgagatctgcgaaatacag
ttgtaccatctggcaaataatatcaagaatacggccataaaccccgaaattgaggcctat
ctgcctgccattaacgatgtgttacagggcatagaccgagacgaacttatccgaaaagtg
gtttcggtggagttcagccgtttctacaattattacagtaagacccgcgatttgaacagt
ggggtcggttcctctgaaggaaaccgacgcgagggcaaatctgccgagggtaccgttcgc
tacttcataaacatcggtgaacgtgatggatatgattggatgtcgttgaaagattttctt
cgtgataccctggggcttgacaaagatgatgtttaccgtgtcgacaccaaagacagcttt
tcgttcttcaacactgacgacaccatgacccctttggtcttggaaaccttcaaagatttt
caggtcaatggccgctacatcaatgtagaggtttcaaagagccccggccgtggctcgggg
cgcaaaaaagacaagaacagggggcgtagaaacgacaagcggtcctctttcaaagaagga
aggggcaaatcgcgaaatcgcaaaaacaagaaaaagcaaggcttcttttag
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