Micrococcus luteus: Mlut_05560
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Entry
Mlut_05560 CDS
T00918
Name
(GenBank) transcription-repair coupling factor Mfd
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
mlu
Micrococcus luteus
Pathway
mlu03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mlu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Mlut_05560
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mlu03400
]
Mlut_05560
Enzymes [BR:
mlu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Mlut_05560
DNA repair and recombination proteins [BR:
mlu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Mlut_05560
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
MFD_D3
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
ACS30094
UniProt:
C5C9E2
LinkDB
All DBs
Position
605267..608923
Genome browser
AA seq
1218 aa
AA seq
DB search
MSVPETTPVLAPLLPRLRAERAIEAAAASAARPLESRGVELEIGLPDGARAPLLTVLAEA
LAEGHGERAAVLVVTATTREAEDLVTDLAAWAPAGAAALFPSWETLPHERLSPRSDTVGA
RLAVLRRLAHPEEHAEGPLRIVVAPVRAVLQPLVAGLGELSPVTLRTGEERDFDGVVAAL
ADAAYSRVDMVSRRGEFAVRGGLIDVFPPTEDYPVRIEFFGDEVEQMRWFSVADQRSLED
TTEDGSGHPSELYAPPCRELLITDHVRRRAKELIPAMPAAADMLDRIAEGVAVEGMESLS
PLLAEAMTSLPRMLPTGSLTVLVEPERLRGRADDLLATNEEFLQAAWAGAAQGAVAPVDV
AGADQSAAGGFLTVAELRAAALEQDQGFWSVTALVSDDELLPDAATLRATLGVPQTFSGD
IEAMVAHTRVRLAEGWHAVVLTDGPGSTRRLAELTTEAGLTASVADGPLPADLAPGRVSI
ATAPVGSGFTIPDAQIALITEHDLFGRHRTAGTRAPGARLARKRRNAVDPLTLQPGDHVV
HSQHGIARFVELQRRKVTGGPRTAPGAEESYREYLVLEYAPSKRGAPGDRLFVPTDQLDL
ISTYVGGETPSLSRMGGSDWAQTKSKAKRATREIAGELIRLYSARMASRGHAFAPDTPWQ
AELEEAFPFIETPDQLTTIEDVKKDMEEAVPMDRLVSGDVGFGKTEVAVRAAFKAVQDGK
QVAVLVPTTLLARQHHQTFSDRFAGFPVKVAALSRFQTAKESKEVVEGLAHGEVDVVIGT
HRLLSDQVQFKDLGLVVVDEEQRFGVEHKEALKKMRTNVDVLAMSATPIPRTLEMSLTGI
RETSTLATAPEERHPVLTSVGPYSDQQVTAAIRRELMREGQVFYVHNRVTTIDKVAKRIA
ELVPEARIAVAHGKMSEARLEQIMVDFWERKLDVLVSTTIIETGLDIANANTLIVEDAHR
YGLSQLHQLRGRVGRGRERAYAYFLYDPQKPLGEVALERLKAVATHNELGAGMQLAMKDL
EIRGAGNLLGGEQSGHIAGVGFDLYLRMVGEAVADFKGEEDTSPAEVKVELPVNAHLPHD
YVPGERLRLEMYRNLAQAADDAAVDAVVEELKDRYGPLPDPVEALVAVARFRNRARAAGV
TEVMLLGQNVKFGPAADLPESRQMRLTRMYKGAQVKPALNGVLIPRPKTKPVMGQDLVDV
PLLEWAQQVVDAIFAPEG
NT seq
3657 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtccccgagaccacccccgtcctcgccccgctgctgccgcgcctgcgcgccgaa
cgtgccatcgaggcggccgccgcctccgccgcccggccgctcgagtcccggggcgtcgag
ctggagatcggcctgcccgacggcgcccgcgcgcccctgctgaccgtcctggccgaggcg
ctggccgagggccacggcgagcgcgccgccgtcctcgtggtcaccgcgaccacccgcgag
gccgaggacctcgtgaccgacctcgccgcctgggcccccgccggcgccgccgcgctgttc
ccgtcctgggagacgctgccccacgagcgcctgtccccgcgctcggacaccgtgggcgcg
cgcctggccgtgctgcgccgcctcgcccaccccgaggagcacgcggagggcccgctccgc
atcgtcgtcgcccccgtgcgcgccgtgctgcagcccctcgtggccgggctcggcgagctg
agcccggtgaccctgcggacgggggaggagcgggacttcgacggtgtggtggccgcgctc
gcggatgccgcctactcgcgcgtggacatggtcagccgacgcggcgagttcgccgtgcgc
ggcgggctgatcgacgtgttcccgcccaccgaggactaccccgtgcgcatcgagttcttc
ggcgacgaggtggagcagatgcgctggttctccgtggcggaccagcgctccctcgaggac
accacggaggacggctcgggccacccctccgagctgtacgcgcccccgtgccgcgagctg
ctgatcacggaccacgtgcgccggcgcgccaaagagctgatcccggccatgcccgccgcc
gcggacatgctggaccggatcgccgagggcgtggccgtggagggcatggagtccctctcc
ccgctgctggccgaggccatgacgtcgctgccccgcatgctgcccaccgggtcgctgacc
gtcctcgtggagcccgagcgcctgcgcggccgcgccgacgacctgctggccaccaacgag
gagttcctccaggccgcgtgggccggcgccgcgcagggcgcggtcgccccggtggacgtg
gccggggcggaccagtccgccgcgggtggcttcctcacggtggccgaactccgcgcggcc
gcactcgagcaggaccaggggttctggtccgtcaccgcgctggtctcggacgacgagctg
ctgcccgacgccgccaccctgcgcgccaccctcggcgtcccgcagaccttctccggcgac
atcgaggccatggtcgcgcacacccgcgtccggctcgcggaggggtggcatgccgtggtc
ctcaccgacggccccggctccacccgccgtctcgccgagctcaccacggaggccggcctc
acggcctccgtggcggacgggcccctgcccgcggacctcgccccggggcgggtctccatc
gcgacggcgcccgtcggctccggcttcacgatcccggacgcgcagatcgccctgatcacg
gagcacgacctcttcggccggcaccgcaccgcgggcacgcgcgcccccggggcacggttg
gcccgcaagcggcgcaacgccgtcgacccgctgaccctgcagcccggcgaccacgtggtg
cactcccagcacggcatcgcccgcttcgtggagctgcagcgccgcaaggtcaccggcggg
ccgcgcaccgcccccggtgccgaggagtcctaccgcgagtacctcgtgctcgagtacgcg
ccctcgaagcgcggcgcccccggcgaccggctgttcgtgcccaccgaccagctcgacctg
atctccacctacgtgggcggggagacgccgtcgctgtccaggatgggcggctcggactgg
gcgcagaccaagtccaaggccaagcgcgccacccgcgagatcgccggcgagctcatccgc
ctgtactcggcccgcatggcctcgcgcggccacgcgttcgccccggacaccccgtggcag
gccgagctggaggaggcgttcccgttcatcgagacgccggaccagctgaccaccatcgag
gacgtcaagaaggacatggaggaggccgtccccatggaccggctcgtctccggcgacgtc
ggcttcggcaagaccgaggtggccgtgcgcgccgcgttcaaggcggtgcaggacggcaag
caggtggccgtcctcgtccccacgacgctgctcgcccgccagcaccaccagacgttctcc
gaccggttcgccggcttccccgtgaaggtggccgcgctctcccggttccagaccgccaag
gagtccaaggaggtcgtcgaggggctcgcgcacggcgaggtggacgtggtgatcggcacc
caccggctgctctccgaccaggtgcagttcaaggacctgggcctggtggtcgtggacgag
gagcagcgcttcggcgtcgagcacaaggaggcgctgaagaagatgcgcaccaacgtggac
gtgctcgccatgtccgccacgcccatcccgcgcaccctcgagatgtccctcaccggcatc
cgcgagacctccacgctggccaccgccccggaggagcgccaccccgtgctcacctcggtg
ggcccgtactcggaccagcaggtcaccgcggccatccgccgcgagctgatgcgcgagggc
caggtgttctacgtgcacaaccgcgtcaccaccatcgacaaggtggccaagcgcatcgcc
gagctggtgccggaggcgcggatcgccgtcgcccacggcaagatgagcgaggcccggctc
gagcagatcatggtggacttctgggagcggaagctcgacgtgctcgtgtccaccacgatc
atcgagaccggcctggacatcgccaacgccaacaccctgatcgtggaggacgcccaccgc
tacggcctctcgcagctgcaccagctgcgcggccgtgtgggccgtggccgtgagcgggcg
tacgcgtacttcctgtacgacccgcagaagcccctcggcgaggtggccctcgaacggctc
aaggccgtggccacccacaacgagctcggcgcgggcatgcagctggccatgaaggacctc
gagatccgcggcgccggcaacctgctgggcggggagcagtccggccacatcgccggcgtg
ggcttcgacctctacctgcggatggtgggcgaggccgtggccgacttcaagggcgaggag
gacacctcacccgccgaggtgaaggtggagctgccggtcaacgcccacctgccgcacgac
tacgtgccgggggagcggctgcgcctggagatgtaccgcaacctcgcccaggccgcggac
gacgccgccgtggacgccgtggtggaggagctcaaggaccgctacggcccgctgccggat
ccggtggaggcgctcgtcgccgtcgcccggttccgcaaccgggcccgagctgcgggcgtc
accgaggtgatgctgctggggcagaacgtgaagttcggccccgccgcggacctgccggag
tcccgccagatgcgcctgacccgcatgtacaagggcgcccaggtcaagccggccctgaac
ggcgtcctcatcccgcgtcccaagaccaagccggtcatgggtcaggacctcgtggacgtc
ccgctgctcgagtgggcgcagcaggtggtcgacgcgatcttcgcgccggagggctga
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