Microbacterium lemovicicum: CVS47_00788
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Entry
CVS47_00788 CDS
T06301
Symbol
deaD_2
Name
(GenBank) ATP-dependent RNA helicase DeaD
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
mlv
Microbacterium lemovicicum
Pathway
mlv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mlv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CVS47_00788 (deaD_2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mlv03019
]
CVS47_00788 (deaD_2)
03009 Ribosome biogenesis [BR:
mlv03009
]
CVS47_00788 (deaD_2)
Enzymes [BR:
mlv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CVS47_00788 (deaD_2)
Messenger RNA biogenesis [BR:
mlv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CVS47_00788 (deaD_2)
Ribosome biogenesis [BR:
mlv03009
]
Prokaryotic type
rRNA helicases
CVS47_00788 (deaD_2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Cas3-like_C_2
Maf_flag10_N
Motif
Other DBs
NCBI-ProteinID:
AZS36188
UniProt:
A0A3Q9IWV6
LinkDB
All DBs
Position
complement(851436..853232)
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AA seq
598 aa
AA seq
DB search
MSETEYPAAAETSTEPASLTFADLGLGEAVLKSLRDVGYETPSAIQAATIPTLLSGRDVV
GLAQTGTGKTAAFALPILDRLDLTQKTPQALVLAPTRELALQVCEAFEKYASHTRGVHVL
PVYGGQGYGVQLSALRRGVHIVVGTPGRIMDHLDKGTLDLSELKYLVLDEADEMLKMGFA
EDVETILADTPATKQVALFSATMPASIRRMSQQYLHDPEEITVKTKTTTSASTTQRYLIV
AWQQKMDALTRILEVENFEGMIIFGRTKIVTEEIAEKLRARGYSAAAINGDVAQDKRERT
VNQLKSGKLDILVATDVAARGLDVDRISHVVNFDIPTDTESYVHRVGRTGRAGRSGDAIS
FVTPRERGLVKAIERATRQELTEMKLPSVDEVNVTRLSRFDDGITAALAQSARIDRFRDI
IAHYVRNHDVPEVDVAAALAVVAQGDSPLLLEADPEPAPREERPRRTDGDTRGERPERRP
RGNSGPMATYRIAVGKRQRVEPRQIVGALANEGGLGRGDFGAIQIRPDFSLVELPADLPA
ATLDRLSGTRISGQLIQLRLDTGGPGRSRTDGASRGGFDRDARSDRDDRAPRKPRHRD
NT seq
1797 nt
NT seq
+upstream
nt +downstream
nt
gtgtctgaaaccgagtaccccgcagcagccgagacgtccaccgagcccgcatccctgacc
ttcgcagatctggggctgggtgaagccgtgctcaagtcgctgcgcgatgtcggctacgag
acgccctccgcgatccaggcggcgaccatcccgacgctgctgtccggccgcgacgtcgtg
ggtctcgcccagaccggcacgggcaagacggccgcgttcgcgctgcccatcctcgaccgg
ctcgacctgacgcagaagacgccgcaggccctcgtgctcgcccccacgcgtgagctcgcg
ctgcaggtctgcgaggccttcgagaagtacgcgtcgcacacgcgcggcgtccacgtgctc
cccgtctacggcgggcagggctacggcgtgcagctgtcggcgctccgccgtggcgtccac
atcgtggtcggcacccccggccgcatcatggaccacctcgacaagggcacgctcgacctg
tccgagctcaagtacctcgtgctcgacgaggccgacgagatgctgaagatgggcttcgcg
gaggatgtcgagacgatcctcgccgacacccccgccaccaagcaggtcgcactcttctcc
gcgaccatgcccgcctccatccgccggatgtcgcagcagtacctgcacgacccggaggag
atcacggtcaagaccaagaccacgacctccgcgagcaccacccagcgctacctcatcgtg
gcgtggcagcagaagatggacgcgctcacccgcatcctcgaggtcgagaacttcgagggc
atgatcatcttcggccgcacgaagatcgtcaccgaggagatcgccgagaagctgcgcgcc
cgcggctactccgccgccgccatcaacggcgatgtcgcgcaggacaagcgcgagcgcacc
gtcaatcagctgaagtcgggcaagctcgacatcctggtggcgacggatgtcgcggcccgc
ggcctcgacgtcgaccgcatctcgcacgtcgtcaacttcgacatcccgaccgacaccgag
tcgtacgtgcaccgcgtgggccgcaccggccgcgccggtcgctcgggcgacgcgatcagc
ttcgtcaccccgcgcgagcgcggtctggtgaaggcgatcgagcgcgccacgcgccaggag
ctcaccgagatgaagctgcccagtgtggacgaggtcaacgtcacccggctctcgcgcttc
gacgacggcatcaccgccgctttggcgcagagcgcccgcatcgaccgtttccgcgacatc
atcgcccactacgtccgcaaccacgacgtgcccgaggtggatgtcgcggccgccctggcc
gtcgtcgcccagggcgactcaccgctgctgctcgaggccgaccccgagcccgctccccgc
gaggagcgcccgcgccgcaccgacggcgacacccgcggcgagcgccccgagcgccgcccg
cgcggcaacagcggacccatggcgacctaccgcatcgcggtcggcaagcgccagcgggtc
gagccgcgccagatcgtcggcgcgctcgcgaatgagggcggcctcggccgcggtgacttc
ggcgccatccagatccggcccgacttctcgctcgtcgagctgcccgccgacctgcccgcc
gccaccctcgatcgcctgtcgggcacgcgcatctcgggtcagctcatccagctccgcctc
gacaccggcggtcccggccgctcgcgcacggacggcgcaagcaggggcggcttcgaccgc
gacgcgcgctccgaccgtgacgaccgcgcaccgcgcaagccccgtcaccgcgactga
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