Microbacterium lemovicicum: CVS47_01063
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Entry
CVS47_01063 CDS
T06301
Symbol
rnj
Name
(GenBank) Ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
mlv
Microbacterium lemovicicum
Pathway
mlv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mlv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CVS47_01063 (rnj)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mlv03019
]
CVS47_01063 (rnj)
Messenger RNA biogenesis [BR:
mlv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CVS47_01063 (rnj)
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
RMMBL
Lactamase_B
Lactamase_B_2
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
AZS36462
UniProt:
A0A3Q9J063
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Position
1141481..1143157
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AA seq
558 aa
AA seq
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MPTDVYDPPALAPGTLRVIPLGGLGEIGRNMTVFEYEGKLLVVDCGVLFPEEHQPGVDLI
LPDFEPIKKRLNDIVGVVLTHGHEDHIGAVPYLLKLKGDIPLIGSGLTLALVEAKLKEHR
IKPYTLTVKEGDHEKLGPFDLEFIAVNHSIPDALAVAIRTPAGLVLATGDFKMDQLPLDG
RLTDLRSFARLGEEGVDLFLVDSTNADVPGFTPLEREIGPVLDQIIGRAPRRVIIASFSS
HVHRVQQVLDAAAAHGRRVALLGRSMVRNMGIAEDLGYLHVPQGILIDYKKARDLPDDKI
VYMSTGSQGEPMAVLSRMANLDHEIQPGPGDTVILASSLIPGNENAVYRVIDGLTKLGAN
VVHKANAKVHVSGHAAAGELLYCYNILTPRNVLPIHGEFRHLMANARLAQDSGVPAERTI
LGENGTVIDLADGVATVTGQLDIGFVYVDGSTVGEITDADLKDRRTLGEEGFISVIVVVD
SATGKIITGPEIHARGFAEDDAVFNAVKPKIAAALAEAANSGVRDTHALSQVVRRTIGRW
VNQSLRRRPMIVPLVIEA
NT seq
1677 nt
NT seq
+upstream
nt +downstream
nt
atgcccactgacgtctacgatccgcccgcactcgccccggggacgctgcgcgtcatcccg
ctcggcggcctcggcgagatcggccgcaacatgaccgtgttcgagtacgagggcaagctc
ctcgtcgtcgactgcggcgtgctgttccccgaggagcaccagcccggggtcgacctgatc
ctccccgacttcgagcccatcaagaagcgcctcaacgacatcgtcggcgtcgtgctcacg
cacggccacgaggaccacatcggcgccgtgccctacctcctcaagctcaagggagacatc
cccctcatcggctccgggctgaccctcgcgctggtggaggcgaagctcaaggagcaccgc
atcaagccgtacacgctgacggtgaaggagggcgaccacgagaagctcgggccgttcgac
ctcgagttcatcgcggtcaaccactccatccccgatgcgctcgccgtcgcgatccgcacg
cccgccggtctggtgctggccaccggcgacttcaagatggaccagctgcccctcgacggc
cgcctcaccgacctccgctccttcgcgcggctgggcgaggagggtgtcgacctcttcctc
gtggactcgaccaacgccgacgtcccggggttcacgcctctcgagcgcgagatcgggccg
gtgctcgaccagatcatcggacgcgccccgcgacgggtcatcatcgcgagcttctccagc
cacgtgcaccgtgtgcagcaggtgctggatgcggcagccgcccatggccgcagggtcgcg
ctcctcggccgcagcatggtgcgcaacatgggcatcgccgaggacctcggctacctccac
gtgccgcagggcatcctgatcgactacaagaaggcccgcgacctgcccgacgacaagatc
gtctacatgtccaccgggtcgcagggcgagccgatggccgtgctcagccgcatggccaac
ctcgaccacgagatccagccgggtcccggcgacaccgtgatcctggcttccagcctcatc
ccgggcaacgagaacgcggtgtaccgcgtcatcgacggcctgaccaagctgggcgcgaac
gtcgtgcacaaggccaacgccaaggtgcacgtgtcgggccacgccgcggcgggggagctg
ctctactgctacaacatcctcactccgcgcaacgtgctgccgatccacggcgaattccgt
cacctgatggccaacgcccggctcgcccaggacagcggcgtgcccgccgagcgcaccatc
ctcggtgagaacggcacggtcatcgacctcgccgacggcgtcgcgaccgtcaccggtcag
ctcgacatcggcttcgtctacgtcgacggctcgacggtcggcgagatcaccgacgccgac
ctcaaggaccgcaggacgctcggcgaggaggggttcatctccgtcatcgtcgtggtcgac
tcggccaccggcaagatcatcaccggtcccgagatccacgcccgcgggttcgcggaggac
gacgcggtgttcaacgccgtgaagcccaagatcgccgcagccctggccgaggcggcgaat
tcgggggtgcgcgacacgcacgcgctgtcgcaggtcgtgcgccgcacgatcggccgctgg
gtcaaccagtcgctgcgccgtcgtccgatgatcgtgccgctcgtcatcgaggcctga
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