Microbacterium lemovicicum: CVS47_01555
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Entry
CVS47_01555 CDS
T06301
Symbol
rne
Name
(GenBank) Ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
mlv
Microbacterium lemovicicum
Pathway
mlv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mlv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CVS47_01555 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mlv03019
]
CVS47_01555 (rne)
03009 Ribosome biogenesis [BR:
mlv03009
]
CVS47_01555 (rne)
Enzymes [BR:
mlv01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
CVS47_01555 (rne)
Messenger RNA biogenesis [BR:
mlv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CVS47_01555 (rne)
Ribosome biogenesis [BR:
mlv03009
]
Prokaryotic type
rRNA processing factors
CVS47_01555 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
S1
Motif
Other DBs
NCBI-ProteinID:
AZS36934
UniProt:
A0A3S9WA84
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All DBs
Position
complement(1661189..1663645)
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AA seq
818 aa
AA seq
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MADDTDRTDHHHDDAAQDGQLSPQEHPAPESSDAEAPSAEAEASEPAASAEPEAAAPAEP
EAAPPADTADDAEQASTDSPDAGATDQAAGPAEPEAASTAASAPAAESSPEQAPAPEAAE
EKALPTAVSLGLLPEVFVSSVSTQLMFYAPEIAALPPLPAPEPTFEANEESASSARRRNR
RRGGEGRDEASDTPPAPPRQRAVELITEPQRIKGSTRLEAKKQRRRDGREAGRRRTVVTE
AEFLARRESVDRVMIVRSKNNRVQIAVLEDNVLVEHYVARNQDASLIGNVYIGRVQNVLP
SMEAAFVDIGRGRNAVLYSGEVDWDNVETGNQPRRIELALKSGDRVLVQVTKDPVGHKGA
RLTSQISLPGRYLVYVPAGAMNGISRKLPDTERARLKRILKEVLPESSGVIVRTAAEGAT
EEQLTRDVQRLTAQWEHISRQIESIPAPSLLHSEPDLLVKIVRDVFNEDFTRMLIQGEDA
QSTISSYLAGVAPDLLERVEKYEGDGDPFDDYRVTEQIEKALDRKVWLPSGGSLVIDRTE
AMTVVDVNTGKFVGTGGNLEETVTKNNLEAAEEIVRQLRLRDIGGIIVVDFIDMVLESNR
DLVLRRLVECLSRDRTKHQVAEVTSLGLVQMTRKKLGLGLLETFSEPCDVCAGRGVVVHH
DPVARHRSGGPGAAPMGRRPRSTSQPAGGPVGGTHVITEGAKSALAQIAASTIHPVQGAE
PVVVETDAAASVVVDDQADERATFAERPERGERPERAKKQRKKRPAQNGGAPRSEAESLL
DTVLNALPEPKAPGQGRGRRRVTTAALTGTPVSHTTED
NT seq
2457 nt
NT seq
+upstream
nt +downstream
nt
atggctgatgacaccgaccgaacagaccaccaccacgacgacgcggcgcaggacgggcag
ctgagtccgcaggagcacccggcaccggagagcagcgacgcggaagcgccctcggcagaa
gccgaggcgtccgagcccgcggcatcggctgagcctgaggccgcggcgcccgccgagccc
gaagccgcgccgcccgccgacacggcggacgacgccgagcaggcatcgaccgactctccc
gatgcgggggccaccgaccaggccgcaggaccggccgagccggaggccgcctccaccgcg
gcttccgcgcccgccgctgaatcctcgcccgagcaggcgccggcacccgaggccgcggag
gagaaagccctcccgacggccgtctcgctcgggctgcttccggaggtgttcgtctcctcc
gtctccacgcagctgatgttctacgcaccggagatcgcggcactgccgccgctgcctgct
ccggagccgaccttcgaggcgaacgaggagtccgcctcgtcggcacgccgccgcaaccgc
cgtcgcgggggcgagggccgggacgaagcatccgacaccccgcccgcgccgccgcgccag
cgcgccgtggagctcatcaccgagccgcagcgcatcaagggctcgacgcgcctcgaggcg
aagaagcagcgtcgtcgcgacggccgcgaagccggacgccgccgcaccgtggtcaccgag
gcggagttcctcgctcgccgcgagtccgtcgaccgcgtcatgatcgtgcgctccaagaac
aaccgcgtgcagatcgcggtgctcgaggacaacgtgctcgtggagcactacgtcgcacgc
aaccaggacgcctcgctcatcggcaacgtctacatcggccgcgtgcagaacgtgctgccg
tcgatggaggccgcgttcgtcgacatcggccggggacgcaacgccgtgctgtactcgggc
gaggtcgactgggacaacgtcgagaccggcaaccagccgcgccgcatcgagctcgccctc
aagtcgggcgaccgcgtcctcgtgcaggtgaccaaggatcccgtgggtcacaagggcgcc
cgactcacgagccagatctcgctgcccggccgctacctcgtgtacgtgccggccggtgcc
atgaacggcatttcgcgcaagctccccgacaccgagcgcgcccgtctcaagcgcatcctg
aaggaggtgctccccgagtcctccggcgtgatcgtgcgcacggccgccgagggcgccacc
gaggagcagctcacccgcgacgtgcagcgtctcacggcgcagtgggagcacatcagccgc
cagatcgagtcgatcccggccccgtcgctgctgcactctgagcccgacctgctggtgaag
atcgtccgcgacgtcttcaacgaggacttcacgcgcatgctcatccagggggaggacgcg
cagtccaccatctcgtcctacctcgccggtgtcgcacccgacctcctcgagcgcgtggag
aagtacgagggcgacggcgacccgttcgacgactaccgcgtcacggagcagatcgagaag
gcgctcgaccgcaaggtctggctgccctccggcggctcgctggtcatcgaccgcaccgag
gccatgacggtcgtggacgtcaacacgggcaagttcgtcggcaccggcggcaacctcgag
gagacggtcaccaagaacaacctcgaggcggccgaggagatcgtccgccagctccgtctg
cgcgacatcggcggcatcatcgtcgtcgacttcatcgacatggtgctcgaatccaaccgc
gacctcgtgctccgccgcctggtggagtgcctcagccgcgaccgcacgaagcaccaggtg
gccgaggtcacgtcgctcggactcgtgcagatgacgcgcaagaagctcggcctcggcctg
ctcgagaccttcagcgagccctgcgacgtgtgcgccggccgcggcgtcgtggtgcaccac
gatcccgtcgcccgtcaccgcagcggcggaccgggagcggcaccgatgggccgtcgcccc
cgcagcaccagccagccggccggtggacccgtgggcggcacgcacgtcatcaccgagggc
gcaaagtcggctctcgcgcagatcgccgcctcgacgatccacccggtccagggcgcggag
ccggtcgtcgtggagacggatgctgcggcatccgtcgtcgtggacgatcaggccgatgag
cgcgcgacgttcgcggagcgacccgagcgcggcgagcgtccggagcgggcgaagaagcag
cgcaagaagcgtccggcgcagaacggcggtgctccgcggagcgaagccgagtcgctgctg
gacaccgtgctgaacgcccttcccgagccgaaggccccgggccaggggaggggacgccgg
cgcgtcaccaccgccgccctcaccggcacgccggtcagccacacgaccgaggactga
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