Mycobacterium lentiflavum: MJO58_21785
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Entry
MJO58_21785 CDS
T08800
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
mlw
Mycobacterium lentiflavum
Pathway
mlw03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mlw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
MJO58_21785 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mlw03400
]
MJO58_21785 (mfd)
Enzymes [BR:
mlw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
MJO58_21785 (mfd)
DNA repair and recombination proteins [BR:
mlw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
MJO58_21785 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
Cas3-like_C_2
ResIII
AAA_22
DAGK_cat
UB2H
Motif
Other DBs
NCBI-ProteinID:
ULP41469
LinkDB
All DBs
Position
complement(4700892..4704596)
Genome browser
AA seq
1234 aa
AA seq
DB search
MTAPGPARPETPIAGLVELALTAPTFQQLAARAAAAPDELNLVGPASARLFVASALARRG
PLLVVTATGREAADLSAELRGVFGDAVAVFPSWETLPHERLSPGVDTVGTRLMVLRRLAR
PDDTTLGPPLRVVVTAARSLLQPMTPQLGLVEPLTLRVGAEVEFESVITRLVELAYTRVD
MVGRRGEFAVRGGILDVFAPTAEHPVRVEFWGDEVSEMRMFAVADQRSIPDVEVDVLVAV
ACRELLLTDDVKARAAELLALAAARLPEGEAAITGSVSDMLAKLSEGIPVDGMEALLPVL
RPPEDGRPALLTDQLAEGTPVLLCDPEKVRSRAADLIKTGREFLEAAWSVAAMGTSEGQA
PVDVEDLGGSGFAELDEVRTAAARAGHPWWTLSQLSDEAAVELDVRAAPSARGHQHDIES
IFAMLRAHVSTGGHAVIVAPGTGTAHRVVERLAESDTPAAMLDSGAAPKAGVVGVLKGPL
HDGLIIPGDPANLVVITETDLTGNRATSAEGKRLAAKRRNTVDPLALTAGDLVVHDQHGI
GRFVEMTERTVGGARREYLVLEYASSKNRGGGAKNTDKLYVPMDSLDQLSRYVGGQAPAL
SKLGGSDWTNTKTKARRAVREIAGELVALYAKRQASAGHAFAPDTPWQAEMEDAFGFTET
VDQLTAITEVKSDMEKPIPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLA
DQHLQTFTDRMTGFPVTVKGLSRFTDPTESRAVLDGLADGSVDIVIGTHRLLQTGVRWKD
LGLVVVDEEQRFGVEHKEHIKSLRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEE
RYPVLTYVGPDDAKQVGAALRRELLRDGQAFYVHNRVSSIDAAAARVRELVPEARVVVAH
GQMPEERLERTVEGFWNREYDILVCTTIIETGLDISNANTLIVERADTFGLSQLHQLRGR
VGRSRERGYAYFLYPPDVPLTETAYDRLATIAQNNELGAGMMVALKDLEIRGAGNVLGVE
QSGHVAGVGFDLYVRLVGEAVEAYKAAADGDTVTTPEEPKDVRIDLPVDAHLPPDYIASD
RLRLEGYRRLAAAPDDAAIDAVVEELTDRYGALPEPAQRLVAVARLRLLCRACGITEVSA
PSAATLRLSPITLLDSAQVRLKRMYPAANYRATTSTVSVPIPRAGGVGAPRLRDVELVQM
VANLVTALQGKPQQEIGITSSSPAPMTREERQAR
NT seq
3705 nt
NT seq
+upstream
nt +downstream
nt
atgaccgcaccggggcctgctcgcccagaaaccccgatcgcggggctcgttgaattagcg
ctgacggcgcccactttccagcagctggccgcgcgtgcggccgccgcgccggacgaactg
aacctggtcggcccggccagcgcgcgcctgttcgtcgccagcgccctggcgcgacgcggg
ccgctgctcgtggtcaccgccaccgggcgcgaagccgccgatctgagcgccgaactgcgc
ggcgtgttcggcgacgcggtggcggtgttcccgtcctgggaaacgctgccgcacgaacgc
ctttcgccgggcgtcgacaccgtcggcacccgcttgatggtgctgcgccggctggcgcgt
cccgacgacaccacgctgggtccacccctgcgggtggtggtgacggccgcgcgttcgctg
ttgcagccgatgacgccgcagctgggtcttgtggaaccgctcacactgcgcgtcggcgcg
gaagtcgaattcgagagcgtgatcacccggctggtcgaactggcctacacccgggtcgac
atggtcggccggcgcggtgaattcgccgttcgcggtggcattctcgacgtcttcgcgccc
acggccgaacacccggtgcgcgtcgagttctggggcgacgaggtcagcgagatgcggatg
tttgcggtcgccgatcagcggtccatcccggacgtcgaggtcgacgtactcgtcgcggtc
gcctgccgcgaattgttgctgaccgacgacgtaaaggcacgggcagccgagctgctggcc
ctggcggccgcacggctgccagaaggggaagccgcgatcaccggcagtgtctccgacatg
ctcgccaagctgtccgaaggcatcccggtcgacggaatggaagcactgcttcccgtcctt
cggccccccgaagatgggcgccccgcgctgctgaccgatcagctggccgagggcaccccg
gtgttgctgtgcgacccggagaaggtgcgcagccgcgccgccgacctgatcaagaccggc
cgcgaattcctcgaggctgcctggtcggtcgcggccatgggcacctcggaaggtcaagcg
ccggtcgacgtcgaggacctgggcgggtcgggcttcgccgaactggacgaggtgcggact
gccgcggcccgggccggccacccgtggtggacgctgagtcagctgtccgacgaggcagcg
gtcgagctggatgtgcgggcggcgccgtcggcccgcggccaccagcacgacatcgaaagc
atcttcgcgatgctgcgcgcgcacgtgtccaccggcggccacgccgtgatcgtcgccccc
ggaaccggtactgcccatcgggtggtggagcggctggccgagtccgatacccccgccgcg
atgctggactcgggtgcggcgcccaaggccggtgtggtcggggtgctcaaggggccgctg
cacgacggcctgatcattccgggcgatcccgccaacctcgtcgtcatcaccgagaccgac
ctgaccggcaaccgggcgacgtcggcggaaggcaagcggctggccgccaagcggcgcaac
accgtcgacccgctggcgctgacagccggcgacctcgtggtccacgaccagcacggcatc
gggcggttcgtcgagatgaccgaacggaccgtcggcggggcccgccgcgaatatctggtg
ctggaatacgcctccagcaaaaaccggggtggcggtgcgaaaaacaccgacaagctgtat
gtcccgatggactccctggaccagttgtcgcggtatgtcggcggccaggcgccggcgctg
agcaagctcggcggcagcgactggacaaacaccaagaccaaggcccgtcgcgccgtccgc
gagatcgccggcgagctggtggcgctatatgccaagcggcaggccagcgccggccacgcg
ttcgcgccggacacgccctggcaggccgagatggaggacgcattcggtttcaccgagacc
gtcgaccagctgaccgcgatcaccgaggtcaagtccgacatggaaaagccgattccgatg
gaccgggtgatctgcggcgacgtcggctacggcaagaccgagatcgcggtgcgggcggcg
ttcaaggccgtgcaggacggcaaacaggtcgcggtgctggtgcccaccacgctgctggcc
gaccagcatctgcagacgttcaccgaccggatgaccggcttcccggtgaccgtcaagggg
ctgtcccggttcaccgatcccaccgagtcccgtgccgtgctcgacggtctggccgacggg
tcggtggacatcgtgatcggcacgcaccggctgctgcagacgggggtgcgctggaaggat
ctgggcttggtcgtggtggacgaggagcagcggttcggcgtcgagcacaaggaacacatc
aagagcctgcgcacccacgtcgacgtgctgaccatgagcgccacgccgatcccgcgcacc
ctggagatgagcctggccgggattcgagagatgtcgacgatcctgacgccgcccgaggag
cgctacccggtgctgacctacgtcggcccggacgatgccaaacaggtcggggccgcgttg
cggcgtgagctgctgcgcgacggccaggccttctacgtgcacaaccgggtcagttcgatc
gacgcggcggcggcccgggtccgtgagctggtgcccgaggcgcgggtcgtggtcgcgcac
gggcagatgccagaagaacggctggaacgcaccgtagaagggttctggaatcgcgaatac
gacatcctggtctgcaccacgatcatcgaaaccggactggacatctccaacgcgaacaca
ctgatcgtcgagcgcgccgacaccttcgggctctcgcagctgcaccagctgcgcggccgg
gtgggccgcagccgggaacggggctacgcctacttcctctatccgccggacgtgccgctg
accgagacggcctacgaccggctggcgaccatcgcgcagaacaacgagctgggcgcgggc
atgatggtcgcgctgaaggacctcgaaatccgcggcgccggcaatgtgttgggcgtcgag
cagtccgggcacgtcgccggggtcggcttcgacctgtacgtgcggttggtgggtgaggcc
gtcgaggcctacaaggccgccgccgacggtgacacggttactacacccgaggagcccaaa
gatgtgcgcatcgacctgccggtggacgcgcatctgccaccggactacatcgccagcgac
cggttgcggctggagggctaccggcgcctggccgccgcgcccgacgacgcggccatcgac
gccgtcgtggaggagctgaccgaccgctacggggcgctcccggaaccggctcagcggctg
gtggccgtggcgcggttgcggctgttgtgccgtgcctgcggcatcaccgaggtgtcggcc
ccgtctgcggcgacactgcggctgtcgccgattacgctgctagattctgcccaggtgcgg
ctcaagcggatgtatccggccgccaactaccgcgccaccacgtccacggtgtctgttccg
atcccgcgagccggcggagtgggcgcgccgcggcttcgcgatgtcgagttggtgcagatg
gtggccaacttggtgaccgccctgcaagggaaaccgcagcaggaaattggtataacgagt
tcgtcacctgcgccgatgaccagggaggagcgacaagcgcgatga
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integrated database retrieval system
