Mycobacterium lentiflavum: MJO58_22900
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Entry
MJO58_22900 CDS
T08800
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
mlw
Mycobacterium lentiflavum
Pathway
mlw03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
mlw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
MJO58_22900
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mlw03400
]
MJO58_22900
Enzymes [BR:
mlw01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
MJO58_22900
DNA repair and recombination proteins [BR:
mlw03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
MJO58_22900
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
RNA_ligase
UPF0261
Motif
Other DBs
NCBI-ProteinID:
ULP41656
LinkDB
All DBs
Position
complement(4950133..4952391)
Genome browser
AA seq
752 aa
AA seq
DB search
MAPRVKLTNPDKVLYPAAGTTKSDVFAYYTAIAEVMLPHIAGRAATRKRWPNGVEQSSFF
EKQLAASAPEWLPRASITHRSGTTTYPIIDSVDGLAWIAQQAALEVHVPQWRFVAQWTRR
NAEELKPGPATRLVFDLDPGEGVTMAQLAEVARAVRDLIADIGLTTFPLTSGSKGLHLYA
PLEEPVSSNGATVLAKRVAQQLETSMPKLVTSTMTKSLRAGKVFLDWSQNNGSKTTIAPY
SLRGRQYPTVAAPRSWEELDDPGLTQLRYDEVLTRVDRDGDLLEPLDADAPVADRLTKYR
SMRDAAKTPEPVPDAKPAAGQGNTFVIQEHHARRLHYDFRLERDGVLVSWAVPKNLPETT
SVNHLAVHTEDHPLEYGTFEGDIPKGEYGAGKVVIWDSGTYDTEKFRDDEVIVNLHGSRI
SGRYALIQTKGDQWLAHRMKDQKVFEFDEVAPMLATHGSVAKLKSGQWAFEGKWDGYRLL
IEADRGSVRARSRSGRDVTKEYPQLASLAKDLVDHHVVLDGEIVALDESGVPSFNEMQNR
NRATRIEFWAFDLVYLDGRSLLRAKYADRRKLLETLASATSLIVPELVPGNDGAQALEYS
RKHGWEGVVAKKRDSTYQPGRRSSSWVKDKHWSTQEVVIGGWKAGEGGRTSGIGSLMVGI
PGSGGLHFVGRVGTGFTERDLANLKKTLAPLHTDESPFDARLPTRDAKGVTFVEPVLVGE
VRYSEWTPDGRLRQPSWRGLRPDKKPSEVVRE
NT seq
2259 nt
NT seq
+upstream
nt +downstream
nt
atggcaccacgggtgaagctgacgaaccccgacaaggtgctctaccctgccgccggcacc
accaagtccgacgtcttcgcctactacaccgcaatcgccgaagtgatgctgccacacatc
gccggccgtgcggccacccgtaagcgctggcccaatggcgttgagcagtcatcgtttttc
gaaaagcagctggctgcctcggctcctgagtggttgccgcgcgccagcattacccaccgg
tccggaacgacgacgtatccgatcatcgacagtgtcgacggactggcctggatcgcgcag
caggcggcgctggaagtacacgtgccacagtggcggttcgtcgcgcagtggacccgcaga
aacgccgaagaactcaagcccgggcccgcaacacgattggtgttcgacttggacccgggt
gagggcgtcacgatggcgcagctggccgaggtggcccgggcggtacgggacctgatcgcc
gatatcgggctgaccaccttccccctcaccagcggcagcaagggactgcacctctatgcg
ccactggaggagccggtgagcagcaatggggccaccgtactggcgaaacgcgttgcacaa
caactggaaacatcgatgcctaagctggtcacctcgacgatgaccaagagcctgcgggcc
ggcaaggtattcctggattggagccagaacaacggatccaagaccacgatcgcgccgtac
tcgctgcgtggcagacagtacccgaccgtcgcggcaccccgcagctgggaggaactcgac
gacccggggctgacgcagctgcgctacgacgaggtgctgacccgcgtcgaccgcgacgga
gatctgctggagccgctggatgccgatgcacccgtcgcggaccggctgacgaagtatcgc
agcatgcgcgacgcggcgaagaccccggagccggttcctgacgcgaaacctgccgcagga
cagggaaatacattcgtcatccaggagcatcatgcccgccggctgcactacgatttccgg
ctggaacgagacggcgtactggtgtcgtgggcggtgccgaagaacctgcccgagacgacg
tcggtgaatcatctcgcggtgcacaccgaagaccatcccttggaatacggcacgttcgag
ggcgacattcccaagggtgaatacggcgccggcaaggtggtcatctgggattccggaact
tacgacaccgagaagtttcgcgacgacgaggtgatcgtgaatctgcacggcagccgaatt
tccggacgctacgccctgattcagaccaagggtgaccagtggctggcgcaccggatgaaa
gaccagaaggtcttcgagttcgacgaggtcgctccgatgctcgccacgcatggttcggtg
gctaagctcaagtccggccagtgggccttcgagggaaagtgggacggttaccggctgctg
atcgaggcggatcgcggcagtgtgcgagcccggtccagaagcggccgtgacgtcaccaag
gagtatccgcaattagcttcgctggcaaaagatctggtcgatcatcacgtggtgctcgac
ggcgagatcgtggcgctggacgaatccggggtacccagcttcaacgagatgcagaaccgc
aaccgcgccacccgcatcgagttctgggcgttcgacctggtttacctggacggtcgctcg
ctgctgcgggcgaagtacgccgaccgtcgcaaacttctggaaactctcgccagcgcaacc
agtctcatcgttcccgagctggtccccggcaacgacggcgcgcaggcgctcgagtattcc
cgcaagcacggctgggagggcgtggtcgccaagaagcgcgactccacctatcagccgggc
cgacgctcgtcgtcctgggtcaaggacaagcattggagcacacaggaagtcgtcatcggc
ggctggaaggccggagaaggcgggcgcaccagcggaatcggttcgctgatggtcggtatt
ccgggcagtggcgggctgcacttcgtgggcagggtcggcaccggcttcaccgagcgtgac
ctggccaacttgaaaaagacgctggcgccgctgcacaccgacgaatccccgttcgatgcc
aggctgcccacccgcgacgccaagggcgtgacgttcgtcgagccggtcctggtgggcgag
gtgcgctacagcgaatggacgccggatggtcgcttgcgccaaccgagttggcgtggactg
cgaccagacaagaagccgagtgaggtggtgcgcgaatga
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