KEGG   Mirounga leonina (Southern elephant seal): 117998211
Entry
117998211         CDS       T07472                                 
Name
(RefSeq) DNA ligase 1 isoform X1
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
mlx  Mirounga leonina (Southern elephant seal)
Pathway
mlx03030  DNA replication
mlx03410  Base excision repair
mlx03420  Nucleotide excision repair
mlx03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:mlx00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    117998211
   03410 Base excision repair
    117998211
   03420 Nucleotide excision repair
    117998211
   03430 Mismatch repair
    117998211
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:mlx03032]
    117998211
   03400 DNA repair and recombination proteins [BR:mlx03400]
    117998211
Enzymes [BR:mlx01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     117998211
    6.5.1.6  DNA ligase (ATP or NAD+)
     117998211
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     117998211
DNA replication proteins [BR:mlx03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    117998211
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     117998211
DNA repair and recombination proteins [BR:mlx03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     117998211
   NER (nucleotide excision repair)
    Other NER factors
     117998211
   MMR (mismatch excision repair)
    Other MMR factors
     117998211
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N EF-hand_7 EF-hand_1 DNA_ligase_A_C EF-hand_6 EF-hand_8 EF-hand_5 AIF-1 EF-hand_9 Dockerin_1 DDR RNA_ligase PucR EH
Other DBs
NCBI-GeneID: 117998211
NCBI-ProteinID: XP_034842779
LinkDB
Position
Unknown
AA seq 1040 aa
MQRSIMSFFCPKNEGKVKKPEKETSNSVRETEPPPKVALKERNGEVPESDSPVKRPGRKV
ARVLGSEGEEEDEAVTPSKGQKPAPSSPQVSPPSPVTFPESSPSLSSSPVDISPAGIPKR
RTARKQLPKRTIQDVLEEQGKDEDREAKRKKEEEAETPPEGLTEPEVTQKKEAEGEGQPV
TPPEHPETSSVEPPPDRALEPEVAEKREAREEDPAKPPAKAPKTVSSFFAPRKPATKKEG
KEEGPGTARQEEAKGPLDPPSYNPAKNNYHPIDDACWKPGQKVPYLAVARTFEKIEEVSA
RLRMVETLSNLLRSVVALSPPDLLPILYLSLNRLGPPQQGLELGVGDGVLLKAVAQATGR
QLESVKAEAAEKGDVGLVAENSRSTQRLMLPPPALTATGVFTKFQDIARLAGSASTAKKM
DVIKGLFVACRHSEARYIARALSGRLRLGLAEQSVLAALAQAVSLTPPGQESPPAVVDAG
KGRTAEARKTWLEEQGMILKQTFCEVPDLDRIIPVLLEHGLERLPEHCKLSPGVPLKPML
AHPTRGVGEVLKRFEEAAFTCEYKYDGQRAQIHVLEGGEVKIFSRNQEDNTGKYPDIISR
IPKIKLPSVTSFILDTEAVAWDREKKQIQPFQVLTTRKRKEVDAAEIQVQVCLYAFDLIY
LNGQSLVREPLSRRRQLLRENFMQTEGEFVFATSLDTKDTEQIAEFLEQSVKDSCEGLMV
KTLDVDATYEIAKRSHNWLKLKKDYLDGVGDTLDLVVIGAYLGRGKRAGRYGGFLLAAYD
EESEEFQAICKLGTGFSDEELEEHYQRLQALVLPTPRSYVRADGAVAPDHWLDPSAVWEV
KCADLSLSPIYPAARGLVDGEKGISLRFPRFIRVREDKKPEEATTSAQERPLGQDEIEEL
QEAFLEFDKDRDGFISCKDLGNLMRTMGYMPTEMELTELGQQIRMNLGGRVDFDDFVELM
TPKLLAETAGMIGIQEMRDAFKEFDTNGDGEITLGELQQAMQRLLGEKLTPREISEVVQE
ADVNGDGTVDFEEFVKMMSR
NT seq 3123 nt   +upstreamnt  +downstreamnt
atgcagcggagtatcatgtcatttttctgccccaagaatgagggcaaagtgaaaaagcca
gagaaggagacctccaacagcgtcagagagacagagccacctccaaaggtggcgctgaag
gagcgcaacggagaggtgcctgagagcgattctccagtgaagaggccagggcggaaggtg
gcccgggtcctgggcagtgaaggggaggaggaggacgaagccgtcacgccctccaaaggc
cagaagcctgcccctagctctccacaagtctcccctcccagccctgtcacatttcccgag
agcagcccctccctctccagctctcctgtggacatctccccagcagggatcccgaagcgg
cgcacagctcggaagcagcttcctaagcggacaatacaggatgtcctggaggagcagggc
aaggatgaggacagagaggccaagaggaagaaggaggaagaagctgagaccccaccggaa
ggcctcacagagcctgaagtgacccaaaagaaagaagcagaaggggagggccagcccgtg
acgccccctgagcacccagagacctcctcagtggagcccccgccagacagagccttggag
cctgaggtggcggagaagcgggaggctcgagaggaggacccggccaagccgcccgccaaa
gcgcccaagacggtcagcagcttcttcgccccccggaaaccggcaaccaagaaagaaggg
aaagaagagggacctggcacagcaagacaggaggaggccaaggggcccctggaccccccc
agctacaatcctgccaaaaacaactaccatcccattgacgacgcgtgctggaagccaggc
cagaaggtcccttacctggctgtggcccggacatttgagaagattgaggaagtttctgct
cggctccggatggtggagacgctgagcaacttgctgcgttccgtggtggccctgtcacct
ccagacctcctccccatcctctacctcagcctcaaccgcctcgggccaccccagcagggc
ctggagcttggcgtcggtgacggcgtcctcctcaaggcggtggcccaggccacggggcgg
cagctggagtctgtcaaggccgaggcagccgagaagggcgacgtggggctggtggccgag
aacagccgcagcacccagagactcatgctgcccccgcccgctctcactgccaccggggtc
ttcaccaagttccaagacatcgcccggctggccggcagtgcttccacagccaagaagatg
gacgtcatcaaaggcctctttgtcgcctgccgccactcggaagcccgatacatcgccaga
gccttgagcggccggctgcgcctcgggctggcggagcagtcggtgctggccgcgctcgcc
caggccgtgagcctcacgcccccaggccaagaatcgcccccggccgtcgtggatgctggg
aagggcaggacagcggaggcccgaaagacgtggctagaggagcaaggcatgatcctgaag
cagacgttctgcgaggtgcccgacctggaccggatcatccctgtgctgctggagcacggc
ctggagcgcctcccagagcactgcaagctgagcccaggggttcccctgaaaccaatgctg
gcgcaccccacccgtggtgtcggcgaggtcctgaaacgcttcgaggaggcagctttcacc
tgcgagtacaaatacgacgggcagagggcgcagatccacgtcctggaaggcggggaggtg
aagatcttcagcaggaatcaggaagacaataccggaaagtacccggacatcatcagccgc
atccccaagattaaactcccgtcagtcacatccttcatcctggacacggaagccgtggct
tgggaccgggaaaagaagcagatccagccattccaagtgcttaccacccgcaaacgcaag
gaggtggacgcggcagagatccaggtgcaggtgtgtctgtacgccttcgacctcatctac
ctcaatggacagtccctggtgcgtgagccgctttcccgacgccggcagcttctccgggag
aacttcatgcagacggagggcgagtttgtcttcgccacctccctggacaccaaggacacg
gagcagatcgccgagttcctggagcagtctgtgaaagattcctgcgaggggttgatggtg
aaaaccctggacgtcgatgccacctacgagatcgccaagagatcccacaactggctgaag
ctgaagaaggactacctcgatggtgtgggcgacaccctggacctcgtggtgatcggtgcc
tacctgggccgtggcaagcgggccggccgctatgggggcttcctgctggctgcctacgac
gaggagagtgaggagttccaggccatatgcaagctcggaactggcttcagtgacgaggag
ctggaggagcattaccagaggctccaggccctggtgctgcccaccccacgctcctatgtc
cgggcggacggcgccgtggcccccgaccactggctggaccccagcgccgtgtgggaggtg
aaatgtgccgatctgtccctgtcccccatctaccccgctgcccggggcctggtggatggt
gagaaggggatctcccttcgcttccctcggtttatccgcgtccgtgaagacaagaagccc
gaggaggccaccaccagtgcccaggaaagacccctgggacaagatgagatcgaagagctt
caggaagcatttcttgagtttgacaaggacagagatgggttcatctcctgtaaggatttg
gggaatctcatgaggacgatgggttacatgcccacggagatggagctgactgaactgggc
cagcaaatccgcatgaacttaggtggccgtgtcgactttgacgattttgtggagctcatg
actcctaaactgcttgcagaaacagcagggatgatcggtatccaggagatgagagacgcc
ttcaaggaatttgacaccaacggagacggggagatcaccctcggggagctgcagcaggcc
atgcagaggctcctgggagagaagctcacgccccgagagatctcggaggttgtgcaggag
gccgacgtgaacggagacggtaccgtcgactttgaagagtttgtgaagatgatgtctcgc
tga

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