Mirounga leonina (Southern elephant seal): 117998764
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Entry
117998764 CDS
T07472
Symbol
RTCB
Name
(RefSeq) RNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
mlx
Mirounga leonina (Southern elephant seal)
Brite
KEGG Orthology (KO) [BR:
mlx00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
mlx03016
]
117998764 (RTCB)
Enzymes [BR:
mlx01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
117998764 (RTCB)
Transfer RNA biogenesis [BR:
mlx03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
117998764 (RTCB)
Prokaryotic type
tRNA splicing ligases
117998764 (RTCB)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Cu-oxidase_4
Motif
Other DBs
NCBI-GeneID:
117998764
NCBI-ProteinID:
XP_034843533
LinkDB
All DBs
Position
Unknown
AA seq
505 aa
AA seq
DB search
MSRSYNDELQFLEKISKNCWRIKKGFVPNMQVEGVFYVNDALEKLMFEELRNACRGGGVG
GFLPAMKQIGNVAALPGIVHRSIGLPDVHSGYGFAIGNMAAFDMSDPEAVVSPGGVGFDI
NCGVRLLRTNLDESDVQPVKEQLAQAMFDHIPVGVGSKGVIPMSAKDLEEALEMGVDWSL
REGYAWAEDKEHCEEYGRMLQADPNKVSARAKKRGLPQLGTLGAGNHYAEIQVVDEIFNE
YAAKKMGIDHKGQVCVMIHSGSRGLGHQVATDALVAMEKAMKRDKIIVNDRQLACARIAS
PEGQDYLKGMAAAGNYAWVNRSSMTFLTRQAFAKVFNTTPDDLDLHVIYDVSHNIAKVEQ
HVVDGKERTLLVHRKGSTRAFPPHHPLIAVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMT
ETFGTTCHGAGRALSRAKSRRNLDFQDVLDKLADMGIAIRVASPKLVMEEAPESYKNVTD
VVNTCHDAGISKKAIKLRPIAVIKG
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atgagtcgtagttataatgatgagctgcagttcttggaaaagatcagtaaaaactgctgg
agaatcaagaagggcttcgtgcccaacatgcaggttgaaggagttttctacgtgaatgat
gctctggaaaaattaatgtttgaggaactaaggaatgcctgtcggggtggtggtgtcggt
ggcttcctgccagccatgaaacaaattggcaatgtggcagccctgcctgggattgttcat
cgatctattgggcttcctgatgtccattcaggttatgggtttgctattgggaatatggca
gcctttgatatgagtgaccccgaagcagtggtatccccaggtggtgttggatttgacatc
aactgcggtgtgcgcttgctaagaaccaatttagacgaaagcgatgtccagcctgtgaag
gagcagcttgcccaagctatgtttgaccacattcctgttggggtgggatcaaaaggtgtc
atccccatgagtgccaaagacttggaggaggccttggagatgggtgtggactggtccctg
agggaaggctatgcctgggctgaggacaaggagcactgtgaggagtacggaaggatgttg
caggctgaccccaacaaggtctccgcaagggctaagaaaagaggtcttcctcagttgggg
accctgggagcaggcaaccactatgcagaaatccaggttgtggatgagattttcaatgag
tacgcagctaagaaaatgggcatcgaccataagggacaggtgtgtgtgatgatccacagt
ggaagcagaggcttgggccaccaagtagccacagatgcactggtagctatggaaaaagcc
atgaagagagacaagattatagtcaacgaccggcagttggcttgtgctcggatcgcttcc
ccagagggtcaggactacctaaaggggatggcagctgctgggaactatgcctgggtcaac
cgctcctccatgaccttcttaacccgtcaggccttcgccaaggtcttcaacacaacccct
gatgacttggacctgcatgtgatctatgacgtttctcacaatattgccaaagtagagcag
cacgtggtggacggaaaggaacggacactgttggttcacaggaagggatccacccgagct
ttcccccctcaccatcccctcattgctgttgattaccaactcactggacaacccgtgctc
attggcggcactatgggtacctgtagttacgttcttactggcactgaacagggcatgact
gagacctttggaacaacttgtcatggagcgggccgtgcattgtcccgagcaaaatctcgt
cgtaatttagattttcaggatgtcttggacaaactggcagatatgggaatcgcaatccgc
gttgcctcacccaaattggttatggaagaggctcccgagtcctataagaacgtgacggat
gtggtgaacacctgccacgatgctggaatcagcaagaaggccattaaactgagaccgatt
gccgtgatcaaaggatag
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