Mirounga leonina (Southern elephant seal): 117999125
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Entry
117999125 CDS
T07472
Symbol
PALB2
Name
(RefSeq) partner and localizer of BRCA2 isoform X1
KO
K10897
partner and localizer of BRCA2
Organism
mlx
Mirounga leonina (Southern elephant seal)
Pathway
mlx03440
Homologous recombination
mlx03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
mlx00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
117999125 (PALB2)
03460 Fanconi anemia pathway
117999125 (PALB2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mlx03400
]
117999125 (PALB2)
DNA repair and recombination proteins [BR:
mlx03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA complex
117999125 (PALB2)
FA (Fanconi anemia) pathway
Downstream FA components
117999125 (PALB2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PALB2_WD40
Beta-prop_WDR19_1st
Motif
Other DBs
NCBI-GeneID:
117999125
NCBI-ProteinID:
XP_034843932
LinkDB
All DBs
Position
Unknown
AA seq
1182 aa
AA seq
DB search
MEEPTGKPLSCEEKEKLKEKLAFLKREYSKTLARLQRAQRAEKVKNSIKKTVEEHDCLLQ
QEISPQLNHSEPKNKVSPCDTLQISTHLDKETGEKTPITLDIEPESFNPGHGPVEELHIQ
RTGDIQEHFPYQVSGSEKRQSKLPGRRKKQKRTYTAQVRESFFDADSLILSGKRLKEQEE
INGENPRTPVNERTYFSSSTSDIPGSPAPVTETNARDVLIPPTAKPQRSVDALVRGKNFP
RMPTLASFTLSNSSSGTHLEHKPPKGDCELTTHNLKNINPALPVNLEAQGRKMTVCTDNP
EVNKAVSASDQLPRSPDLEADNSYSINKFTYDNLSANENQNLKRQNHTEKSLTSPHNTLD
GRNESLQENEVVSQSKSLSPEVTSPASAENETHSCTMLEGLLFPAEYYVRTTRRMSNCQR
KVALEAVIQSHLGVRKKGFKNKSKEATKNLNLCSEETGQSEIRTSDTCTGQPSSRRPQKG
LLLTEVNSPTGPTNNNLPRKAVTQPSGRRHGGKRKSISLPVLDHHELLLPIPGTAGVNRS
KEEVTLHKDQNEKAISHGKKRIKGKEDHCQKEDSLPSRNNAYLALDSAAFRASFQENELL
SLKQLSSFLKTTDFQLPDEVFGPLKLEKLKSCSEKPVEPFVSSMYGRMHLKEGNCSVWEE
LTPQQIDIEMEDLEEEILVLPGKAQPKTSNLTSQSQKKGLPSSILLFTPLNTGAPEDNNR
PTADVCSPAFPTLGATPAFGSQAHCEKVCAEAVGPTCSTPQLPHLKDSDRKQRNSWASPS
KSDCSLVVSGREGQPSCDCDSGPQATPLPPESVPLKDSQLCGNPHPESWKQSTEQTEVTD
LPAYDSLNPGHLQLVSKLKNPSGSCSVDVSAMWWEIAGFKEPCIITACEYVVSLWKLLNT
WQWEKLYSWHFIEVPVLQIVPVPDVCNLVCVALGNLEIREIRALLCSSDGKREKQVLLSS
GNIKAVLGLTERRLVSSSGTLCDQQVEIMTFAEDGRSKEKQFLMSPEETVLTFAEVQGMQ
EALLGTTMMNNIVIWNLKTGQLLKKMYIGDSYQASVCHKAYSEMGLLFVVLSHPCAKESE
PLGSPVFQLIVINPKTSLRVGVMLYGLPQGQAGRFLEGDVKDHFAVAVLTSGTIAIWDLL
LGHCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYRC
NT seq
3549 nt
NT seq
+upstream
nt +downstream
nt
atggaagagcctaccgggaagcccctcagctgtgaggagaaggaaaagttgaaggaaaaa
ttagcattcttgaaaagggaatacagcaagacactggcccgccttcagcgtgcccaaaga
gctgagaaggttaagaattctattaaaaaaacagtggaagaacatgattgcttgctccag
caggaaatttcaccacagctaaaccactcagaacccaaaaacaaagtatctccttgtgac
acattacaaatcagcacccatctggataaagaaactggagaaaagacacctatcacactt
gacattgagcctgagtcctttaaccctggacatggccctgtggaggaattacatatacaa
agaacaggtgatatccaagaacattttccctaccaggtcagtggctctgagaaaaggcag
agtaagctgccagggagaagaaaaaagcagaagagaacatacactgcacaggtgagagaa
tctttctttgacgcggattcactcatactctctggaaaaagactaaaggaacaggaggaa
atcaatggagaaaatcctaggacacctgtaaatgaaagaacttatttttcaagttctacg
tctgacatccctggttctccagcaccagtgacagaaactaatgcaagagatgtattaatt
ccaccaactgccaaaccacaaagaagtgtcgatgcacttgtaagaggaaagaatttcccc
aggatgcctacgcttgcttcatttactctgtcaaatagcagtagtggtacgcaccttgaa
cataagcctcctaaaggtgactgtgaactcactactcacaatctgaaaaacattaaccct
gctttacctgtaaacctagaggcacaaggcagaaaaatgacggtctgtacagataaccca
gaggtaaacaaagctgtaagtgcaagtgaccagctgcctagaagtcctgacttagaggca
gataattcatactctataaataaattcacttatgataacttatcagccaatgaaaaccaa
aacttaaaaagacagaatcacacagagaagtctttaacatctccccataacactcttgat
ggtagaaatgaaagtcttcaggaaaatgaggttgtaagtcagtctaagagtcttagccca
gaagtaacctctcctgcttctgcagaaaatgaaacacattcttgtacaatgctcgaaggc
cttctatttcccgcagaatattatgttagaacgacacgacgcatgtcaaattgccagagg
aaagtagccctggaggctgtaattcaaagtcatttgggtgtcagaaagaaagggtttaaa
aataaaagtaaggaagcaactaaaaatttaaacctttgcagtgaggaaactggccagagt
gaaattagaacatctgacacatgcacaggacaaccaagttcaagaagacctcagaaaggt
ctcttgttaactgaagtcaactctcccaccgggcccactaacaataaccttcccaggaag
gcagttacccagccatctggtagaagacacggaggaaaaagaaagtcaatctccctgcct
gtactggatcatcatgaactacttttgccaattcctggcacagcaggtgttaatagatcc
aaggaagaagtcaccttacacaaagatcagaatgaaaaagcaattagtcatggtaagaag
agaattaaagggaaggaagatcattgtcaaaaagaggactcccttccttccagaaataat
gcttatctagctttggattctgctgcgttcagggcttcatttcaggagaatgaattgcta
agtttaaagcaactgtcatcttttctcaaaaccacagactttcaattacctgatgaagtc
tttggacctcttaagcttgaaaaactgaagtcctgttcagaaaaaccagttgagcctttt
gtatcaagcatgtatgggcggatgcaccttaaggagggaaactgtagcgtttgggaagaa
ctgactcctcaacaaatcgatattgaaatggaggacttggaagaggaaattcttgttctc
ccgggaaaagcacaacctaaaacatcaaacctaacaagccagtctcagaagaagggcctt
ccttcatccatattacttttcacgcctttaaatactggtgcgcccgaggataataatagg
cccacagcagatgtgtgctcgcctgctttccccaccttaggcgctactccggcttttggc
tctcaagcacactgtgaaaaagtgtgtgcagaggctgtcgggccaacttgctctacaccc
caacttcctcacttaaaagacagtgatcggaaacaacgcaacagttgggctagcccgtca
aaatcagattgcagccttgttgtgtcagggagggaaggacagccttcctgtgactgtgat
tctggcccccaggcaacacctcttccccctgagtcagtccctctcaaagacagtcagctg
tgtggaaatccacacccggagtcgtggaaacagtccaccgaacagactgaagtaaccgac
cttcctgcttatgatagcttaaacccaggccaccttcaattggtttcaaagttaaagaat
ccttctggttcctgttcggtggatgtgagtgccatgtggtgggaaatagcaggtttcaaa
gagccatgtatcataactgcctgtgaatacgtagtttctctttggaaacttctcaatact
tggcagtgggaaaaactttattcctggcacttcatagaggttccagtattacagatagtt
ccagtgcctgatgtttgtaatctcgtgtgtgtggctttgggaaatttggaaatcagagaa
atcagggcattactttgttcctctgatggtaaacgtgaaaagcaagtactactgagttct
ggaaatataaaagctgtgcttggcctgacagagaggaggctagtcagtagcagtggtacc
ctttgtgaccaacaagtggaaatcatgacatttgcagaagatggaagaagcaaagaaaaa
caatttttgatgtcccccgaagagactgtactaacttttgccgaggtccaagggatgcag
gaagctctgcttggtaccactatgatgaacaacattgttatttggaatttaaaaactgga
cagctcctgaaaaagatgtacattggtgattcctaccaagcttcagtctgtcacaaagcc
tattctgaaatggggctcctgtttgttgttctgagccatccttgtgccaaagagagtgaa
ccgctgggaagccctgtatttcagctgatcgtgattaatcctaagaccagcctgcgtgtg
ggtgtgatgctctacggccttcctcaagggcaggctggaaggttcctggaaggagacgtg
aaagatcattttgcggttgcagtactaacttctggaacgattgccatttgggacttactt
ctaggtcattgtactgctctcctcccacctgtctctgaccagcattggtcttttgttaaa
tggtcaggtacagattctcatttgctggctggacaaaaagatggaaatatatttgtatac
cgctgctaa
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integrated database retrieval system
