Mirounga leonina (Southern elephant seal): 118000022
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Entry
118000022 CDS
T07472
Symbol
POLR2A
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
mlx
Mirounga leonina (Southern elephant seal)
Pathway
mlx03020
RNA polymerase
mlx03420
Nucleotide excision repair
mlx05016
Huntington disease
Brite
KEGG Orthology (KO) [BR:
mlx00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
118000022 (POLR2A)
09124 Replication and repair
03420 Nucleotide excision repair
118000022 (POLR2A)
09160 Human Diseases
09164 Neurodegenerative disease
05016 Huntington disease
118000022 (POLR2A)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mlx03021
]
118000022 (POLR2A)
03400 DNA repair and recombination proteins [BR:
mlx03400
]
118000022 (POLR2A)
Enzymes [BR:
mlx01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
118000022 (POLR2A)
Transcription machinery [BR:
mlx03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
118000022 (POLR2A)
DNA repair and recombination proteins [BR:
mlx03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
118000022 (POLR2A)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_R
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-GeneID:
118000022
NCBI-ProteinID:
XP_034845390
LinkDB
All DBs
Position
Unknown
AA seq
1989 aa
AA seq
DB search
MHGGGPPSGDSACPLRTIKRVQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDP
RQGVIERTGRCQTCAGNMTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVD
SNNPKIKDILAKSKGQPKKRLTHVYDLCKGKNICEGGEEMDNKFGVEQPEGDEDLTKEKG
HGGCGRYQPRIRRSGLELYAEWKHVNEDSQEKKILLSPERVHEIFKRISDEECFVLGMEP
RYARPEWMIVTVLPVPPLSVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQNGAAA
HVIAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVD
FSARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYII
RDNGDRIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWS
TFRLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQD
TLTAVRKFTKRDVFLERGEVMNLLMFLSTWDGKVPQPAILKPRPLWTGKQIFSLIIPGHI
NCIRTHSTHPDDEDSGPYKHISPGDTKVVVENGELIMGILCKKSLGTSAGSLVHISYLEM
GHDVTRLFYSNIQTVINNWLLIEGHTIGIGDSIADSKTYQDIQNTIKKAKQDVIEVIEKA
HNNELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKIN
ISQVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHA
MGGREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGES
VEFQNLATLKPSNKAFEKKFRFDYTNERALRRTLQEDLVKDVLSNAHIQNELEREFERMR
EDREVLRVIFPTGDSKVVLPCNLLRMIWNAQKIFHINPRLPSDLHPIKVVEGVKELSKKL
VIVNGDDPLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAI
AHPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLT
VFLLGQSARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQSTVVAEDQEWVNVYYEMP
DFDVARISPWLLRVELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIR
IMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKI
IITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALER
ELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETVDVLM
EAAAHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKYGMEIPTNIPGLGAAGPTG
MFFGSAPSPMGGISPAMTPWNQGATPAYGAWSPSVGSGMTPGAAGFSPSAASDASGFSPG
YSPAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSPGGYTPQSPSYSPTSP
SYSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP
TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS
YSPTSPNYSPTSPNYTPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTSPSYSPT
SPSYSPSSPRYTPQSPTYTPSSPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEYTPTSPKY
SPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPTSPTYSPTS
XXXTSPKYSPTSPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPAI
SPDDSDEEN
NT seq
5970 nt
NT seq
+upstream
nt +downstream
nt
atgcacgggggcggccccccctccggggacagcgcatgcccgctgcgcaccatcaagcgc
gtgcagttcggagtcctcagtccggatgaactgaaacggatgtccgtgaccgagggcggc
atcaaataccccgagacaacggaggggggccgccccaagcttggggggctgatggaccca
aggcagggggtgatcgagcgcaccggccgctgccagacctgtgcaggaaatatgacagag
tgtcctggccacttcggccacattgagctggccaaacctgtgtttcacgtgggcttccta
gtgaagacgatgaaagtgttgcgctgcgtctgcttcttctgctccaaactgctcgtggac
tctaacaacccaaaaatcaaggacatcctggccaagtccaaggggcagcccaagaagcgg
ctgacgcacgtgtatgacctgtgcaagggcaagaacatctgcgagggcggggaggagatg
gacaacaagttcggggtggagcagccggagggcgacgaggatctgaccaaagagaagggc
catggcggctgcgggcggtaccagccccgcatccggcgctcgggcctggagctgtacgcg
gagtggaagcacgtcaacgaggactcccaggagaagaagatcctgctgagtcctgagcga
gtgcacgagatcttcaagcgcatctccgatgaggagtgtttcgtgctgggcatggagccc
cgctacgcacggcccgagtggatgatcgtcaccgtgctgcccgtgcccccgctctctgtg
cggcctgctgtggtgatgcagggctctgcccgcaaccaggatgacctgactcacaagctg
gcggacatcgtgaagatcaacaatcagctgcggcgcaatgagcagaacggcgcggcggcc
cacgtcatcgccgaggatgtgaagcttctccagttccacgtggccaccatggtggacaat
gagctgcccggcttgccccgcgccatgcagaagtctggacgccccctcaagtccctgaag
cagcggctgaagggcaaggaaggccgggtccgagggaacctgatgggcaagcgggtggac
ttctcagcccgcaccgtcatcacccccgaccccaacctctccatcgaccaggtcggcgtg
ccccgctccatcgccgccaacatgacctttgcggagatcgtcacgcccttcaacatcgac
agactccaggagctggtgcgcaggggaaacagccagtacccaggggccaagtacatcatc
cgggacaatggcgatcgtattgacctgcgtttccaccccaagcccagtgatcttcacttg
cagaccggctacaaggtggaacggcacatgtgcgacggcgacatcgtcatcttcaaccgc
cagccgactttgcacaaaatgtccatgatggggcaccgagtccgcatcctcccctggtct
acttttcgcttaaatctgagtgtgacgactccatacaatgctgactttgacggggatgag
atgaacttgcacctgccacagtctctggagacgcgggcggagatccaggagctggccatg
gtgccgcgcatgattgtcaccccccagagcaaccgccctgtcatgggtatcgtgcaggac
acgctcacggcagtgcgcaaattcacgaagagagacgtcttcttggagcggggggaggtg
atgaacctcctgatgttcctgtccacgtgggacgggaaggtgccgcagccagccatcctg
aagccgcggcccctgtggacgggcaaacagatcttctccctcatcataccaggccacatc
aactgcatccgcacccacagcacccatcccgatgatgaggatagtggtccttacaaacac
atctctcccggggacaccaaggtggtggtggagaacggggagctgatcatgggcatcctg
tgtaagaagtctctgggcacgtcggctggctcgctggtccacatctcttacctggagatg
ggtcacgacgtcactcgcctcttctactccaatattcagaccgtcattaacaactggctt
ctcatcgagggtcataccattggcattggggactccatcgccgactctaagacctaccag
gacattcagaacaccattaagaaggccaagcaggacgtgatagaggtcatcgagaaggct
cataacaacgagctggagcccaccccggggaacactctgcggcagacctttgagaaccag
gtgaaccgtattctcaacgacgcccgagacaagactggttcctctgctcagaagtccctg
tctgagtacaacaacttcaagtccatggtggtgtccggggccaaaggctccaagatcaac
atctcccaggtcattgctgtcgtcgggcagcagaacgtggaagggaaacggatcccgttt
ggattcaagcaccggaccctgcctcacttcatcaaggacgactacgggcccgagagccga
ggctttgtggagaactcctacctggccggcctcacgcccaccgagttcttcttccacgcc
atggggggtcgcgagggcctcatcgacacagctgtcaagactgccgagactgggtacatc
cagcggcggctcatcaagtccatggagtcggtgatggtgaaatacgacgccaccgtgcgc
aactccatcaaccaggtggtgcagttacgctatggcgaggatggcctggccggcgagagc
gtcgagttccagaacctggctactctgaagccatccaacaaggcttttgagaagaagttc
cgcttcgactacaccaacgagagggccctgcggcgcactctgcaggaggacctggtgaag
gacgtgctgagcaacgcgcacattcagaatgagctggagcgggaatttgagcggatgcgt
gaggaccgggaggtgctcagggtcatcttcccaactggcgacagcaaggtggtgctcccc
tgtaacctgctgcgcatgatctggaacgctcagaaaatcttccacatcaacccccgcctg
ccctccgacctgcaccccatcaaggtcgtagagggagtcaaggaattgagcaagaagctg
gtgattgtgaatggggatgaccccctgagccggcaagctcaggagaacgccacgcttctc
ttcaacatccacctgcgttccaccctgtgctcccgccgcatggccgaggagttccggctc
agcggggaggccttcgactggctgctcggagagatcgagtccaagttcaaccaggccatt
gcccatcccggggagatggtgggcgccctggccgcacagtcccttggagagcctgccacc
cagatgaccttgaacacctttcattatgccggtgtgtctgccaagaatgtgaccctgggg
gtgccccgcctcaaggagctcatcaacatctccaagaagccgaagacaccttcgcttact
gtcttcctgctgggccagtcggctcgagatgctgagagagccaaggacattctgtgccgt
ctggaacatacgacgttgaggaaggtgaccgccaacaccgccatctactatgaccccaac
ccccagagcacggtggtggcagaggatcaggagtgggtgaatgtctactacgagatgcct
gactttgacgtggcccggatctccccctggcttctgcgggtggagctggaccggaagcac
atgactgaccggaagctgaccatggagcagattgccgagaagatcaatgctggtttcggc
gacgacttgaactgcatctttaacgacgataatgccgagaagctggtgctccggatccgc
atcatgaacagcgacgaaaacaagatgcaagaggaggaggaggtggtggacaagatggat
gacgacgttttcctgcgctgcatcgagtccaacatgctgaccgatatgaccctgcagggc
atcgagcagatcagcaaggtgtatatgcacctgccgcagacagataacaagaagaagatc
attatcacggaggacggggagttcaaggccctgcaggagtggatcctggagacggacggt
gtgagcctgatgcgggtgctgagcgagaaggacgtggaccctgtgcgcaccacgtccaac
gacatcgtggagatcttcacggtgctgggcatcgaagctgtgcggaaggctctggagcgg
gaactgtaccacgtcatctcctttgacggctcctacgtcaattaccgccacttggctctg
ctctgtgacaccatgacctgtcgcggccacttgatggccatcacccgacatggggtcaac
cgccaggataccggccctctcatgaagtgctcctttgaggagacggtggacgtgctgatg
gaagcggccgcccacggagagagcgaccccatgaagggggtgtcggagaacatcatgctg
ggccagctcgccccggccggcaccggctgcttcgacctactgctcgacgcggagaagtgc
aagtacggcatggagatccccaccaacatccccggcttgggggccgccggacctaccggc
atgttcttcggctcggcgcccagtcccatgggagggatttctccggccatgacgccctgg
aaccagggcgcaactccggcgtatggcgcctggtcccccagtgttgggagcggaatgacc
ccgggggcagccggcttctcccccagcgccgcctccgacgccagtggcttcagccccggg
tactcgcctgcctggtcccccacgccgggctccccgggctcccccggcccctccagcccg
tacatcccctcaccaggtggtgcgatgtctcccagctactccccgacctcacctgcctat
gagcctcgctcccctgggggctatacgcctcagagtccctcttactcccccacctcgccc
tcctactcccccacctctccgtcctactctccaactagtcccaactatagtcccacgtca
cctagctactccccgacttctcccagctactccccgacctcgcccagctactccccgacc
tcacccagctactccccgacctctcccagctactctccaacttccccgagctactcgccc
acctctcccagttactccccgacctctcccagctactctcccacctctcccagctactcc
ccaacctctcccagctactcgcccacatcccccagctattctcccacatcccccagctac
tctcccacgtccccgagctactcccccacgtccccgagctactcccccacgtccccgagc
tactcaccaaccagccctaactattctccaaccagtcccaattacaccccgacgtcaccc
agttatagcccgacatcacccagctactccccaactagtcccaactacacgcccacgagc
cccaactatagcccgacctctccaagttactctccaacttcgcccagctactccccaacc
tcgccaagctactccccgtcaagcccacgatacacaccacagtctccaacctataccccg
agctcccccagctacagccccagctcccccagctacagcccaacctcgccgaagtatacc
cccaccagtccctcctacagccccagctccccagagtacaccccgacctcccccaagtac
tcccccaccagcccgaaatactcacccacctcccccaagtactcgcccaccagccccacc
tactcacccaccaccccaaaatactccccaacatctcctacttattcgccaacctctccc
gtctataccccaacctcccccaagtactcgcccaccagccccacctactcgcccacctcn
nnnnnnnnnacctcccccaagtactcgcccaccagccccacctactcgcccacctccccc
aagtactcgcccaccagccccacctactcgcccacctcccccaaaggctctacctactcc
cccacttccccgggctattcccccaccagccccacctacagcctcaccagtccggccatc
agcccggacgacagtgatgaggagaactga
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integrated database retrieval system
