Mirounga leonina (Southern elephant seal): 118001109
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Entry
118001109 CDS
T07472
Symbol
SCAF8
Name
(RefSeq) SR-related and CTD-associated factor 8 isoform X1
KO
K13191
RNA-binding protein 16
Organism
mlx
Mirounga leonina (Southern elephant seal)
Brite
KEGG Orthology (KO) [BR:
mlx00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mlx03021
]
118001109 (SCAF8)
03041 Spliceosome [BR:
mlx03041
]
118001109 (SCAF8)
Transcription machinery [BR:
mlx03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
118001109 (SCAF8)
Spliceosome [BR:
mlx03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
118001109 (SCAF8)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CID
RRM_1
Transformer
DUF3525
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
118001109
NCBI-ProteinID:
XP_034846962
LinkDB
All DBs
Position
Unknown
AA seq
1270 aa
AA seq
DB search
MEAVKTFNSELYSLNDYKPPISKAKMTQITKAAIKAIKFYKHVVQSVEKFIQKCKPEYKV
PGLYVIDSIVRQSRHQFGQEKDVFAPRFSNNIISTFQNLYRCPGDDKSKIVRVLNLWQKN
NVFKSEIIQPLLDMAAGIPPPVVTPVLASTTAAMSNTPGTPVTPVTPANVVQGLPDPWVS
QITNTDTLAAVAQILQSPQGQQLQQLIQTLQLQQQKPQPSILQALDAGLVVQLQALTAQL
TAAAAAANTLNPLEQGVAFNKKLMDRFDFGEDSEHSEEPKKEISASQLSHVSESVNNSIF
HQIAEQLQQQNLEHLRQQLLEQQQPQKATPQDSQEGTFGSEHSASPSQGSSQQHFLEPEV
NLDDSIDIQQQDMDIDEGQDGVEEEIFEQEAKKVAVRSRSRTHSRSRSRSPRKRRSRSRS
GSRKRKHRKRSRSRSRERKRKSSRSYSSERRAREREKERQKKGLPPIRSKTLSVCSTTLW
VGQVDKKATQQDLTNLFEEFGQIESINMIPPRGCAYVCMVHRQDAFRALQKLSSGSYKIG
SKVIKIAWALNKGVKTEYKQFWDVDLGVTYIPWEKVKVDDLEGFAEGGMIDQETVNTEWE
TVKSSEPVKETVQTTQSPTPVEKETVVTTQAEVFPPPVAMLQIPVAPAVPAVSLVPPAFP
VSMPVPPPGFSPIPPPPFLRASFNPSQPPPGFMPPPVPPPVVPPPTIPPVVPTSLVQPPL
SMTPETVKDVGFGGLVLPGGSVASSLATSTLPAGNVFNPPTKQAEPEEKVPHLLDHQIPS
GENTRSVIPNDIPSSPAILGGQPPNVTSNSGILGVQRPNVSSNSEIIGIRPSNVSSSSGI
IGAQPPNILNNSGILGLQPPTVSSSSGLLGVLPPNIPNNSGLIGVQPPNVPNAAGLLGTQ
PPAGPQNLPPLNLSSQRMPTMPMLDIRPGLIPQTPGPRFPLIQPGIPPQRGIPPPSVLDS
ALHPPPRGPFPPGDIFSQPERPFLVPGRQSVDNVTNPEKRIPLGNDNIQQEGDRDYRFPP
IEARESISRPPPVDVRDVVGRPIDPREGPGRPPLDGRDHFGRPPVDIRENLVRPGIDHLG
RRDHFGFNPEKPWGHRDFDEREHRVLPVYGGPKGLHEERGRFRSGNYRFDPRSGPWNRGF
GQEVHRDFDDRRRPWERQRDRDDRDFDFCREINGNRLGRDRIQNTWVPPPHPRVFDFFEG
ATSQRKGDNVPQVNGENTERHAQPPPLPVQNDPELYEKLTSSSEINKEKSDTVADIESEP
VVESTETEGT
NT seq
3813 nt
NT seq
+upstream
nt +downstream
nt
atggaggctgtgaaaaccttcaatagcgagttgtattccctgaatgactacaaaccaccc
atttctaaagcgaaaatgacccaaattactaaggcagccatcaaagctattaagttctat
aaacatgtggtacagagtgttgagaaattcattcagaaatgtaaaccagaatacaaggta
cctggactttatgttattgactccattgtacgacaatctcgacatcagtttggtcaagaa
aaggatgtgtttgcacccagatttagtaataacatcattagcactttccagaatttatat
cgttgccctggggatgacaagagtaaaatagtgagagtattaaatttatggcagaagaat
aatgtgtttaagagtgagattattcagcctcttttggatatggcagcagggattcctccc
ccagttgtcacacctgtgttggccagtactactgctgctatgagcaacaccccaggaact
cctgtgacacctgttactccagccaatgtggtccaaggtctaccggatccgtgggtatct
cagataacaaacacagatacacttgcagcagtagctcaaatcttacaaagtcctcaaggc
caacagcttcagcagttaatacagactttacaactacaacagcagaagcctcagccttct
atcctgcaggccctggacgctggtctcgttgtgcagttgcaagctctcacagcacagctc
acggctgcagctgccgcagccaacaccctgaaccccttggaacagggagtggctttcaac
aagaagttgatggataggtttgattttggggaagattctgagcatagtgaagaacccaaa
aaggaaatttcagcttctcaactttctcatgtttcagaatctgtgaacaattccattttt
catcagatagctgaacagctacagcagcaaaaccttgaacatctcagacagcaactccta
gaacagcaacagcctcaaaaggcaacccctcaggatagtcaagagggcacgtttggatca
gagcattccgcctcaccatcacaagggagcagtcaacagcatttccttgaacctgaagtg
aatttggatgattctatagatattcagcaacaggatatggatatagatgaagggcaagat
ggagtggaagaggagatctttgaacaagaagcaaagaaagtggctgttcgctcaagatca
agaacacattcacgatctcgttcaagatcaccaagaaaacgaaggtctcggtcgcgatct
ggttctcgaaagcgtaaacacagaaagcgatcacgctcacgctcaagagaaagaaagagg
aaatcatcacgttcatactcaagtgaaaggagagcgagagaaagggagaaagaacgacag
aagaagggactacctccaattagatctaaaacattaagtgtatgtagtactactttgtgg
gttggtcaggtggataagaaggcaacccagcaagatttaaccaatctgtttgaagagttt
ggacaaattgaatccattaatatgattcctcccaggggctgtgcttacgtctgcatggtt
catcgacaagatgcttttcgggctcttcagaaacttagttccggatcatataaaattggg
tccaaggtcattaagattgcttgggctttaaacaaaggtgtaaaaacagaatataaacaa
ttctgggatgtggatcttggagttacgtatataccgtgggaaaaagttaaagtggatgac
ttggaaggttttgcagaaggaggcatgattgaccaggaaactgtaaatactgagtgggaa
actgtgaaaagctcagaacccgttaaagagacggtgcagacaactcagagcccaactcca
gttgaaaaggagacagtggtcacaacccaggcagaggtttttcctccacctgttgctatg
ttacagattccagtagcgccagccgtgcctgcagttagtttagtcccaccagcatttcct
gtctcaatgccggttcctcctcctggattcagtccaatccctccacctccttttctgcga
gcgagttttaacccttcacaaccacctcctggtttcatgccacctccagttccaccacct
gttgtaccaccacccaccattccaccagtagtaccaacatctttagtgcagccgccatta
tccatgactccagaaactgtgaaagatgttggatttggtggtcttgttttacctggcggt
tctgttgccagcagtcttgctacttccactctgccagctggaaatgtttttaatcctcca
actaaacaagcagagcctgaagaaaaagtacctcatcttctagaccaccagattccttct
ggtgaaaacaccagatcagtgattccaaatgatattccaagtagccctgcaattttagga
ggacagccgccaaatgtgacaagcaattctggaattctgggagtccaaagaccaaatgta
tcgagtaattctgaaattattggaatccggccatctaatgtttccagtagttctgggatt
attggagcccagccaccaaatattctaaataactctggaattttgggactacagccacca
actgtgtcaagtagttctggacttttgggagtgctccccccaaatatccctaataattcc
ggacttataggagtacagccaccaaatgttccaaacgccgctggacttttggggacacaa
cccccagctgggcctcaaaacttaccccctttaaatctctctagtcaaaggatgcccaca
atgccaatgttagacattcgtccaggactaataccacagacacctggaccaagattccct
ttaatacagcctggaattccaccccaaaggggaatccctcccccatcggtacttgattca
gctcttcatccgccaccccgtggtccttttcctccaggagatatttttagtcagccagaa
agaccttttctagttcctggaagacaaagtgtagacaatgttaccaatccagaaaaaagg
ataccacttgggaatgataacattcaacaggaaggagatagagattaccggtttcctccc
attgaagccagggaaagcattagtagacctccccccgtggatgttagggatgtggttgga
cggcctatagatccaagagaaggtcctggaaggcctccattagatggtagggatcatttt
ggaagacctcctgtcgatattagagagaatcttgtgaggccaggcatagatcatcttggt
cgaagagaccactttggctttaatccagagaagccctgggggcatagagattttgatgag
agagaacatcgggttctacctgtctatggtggtccaaaaggcttacatgaagaaagaggt
agatttcggtctggaaactatcgatttgatcctagaagcggtccttggaacagaggattt
ggacaagaagttcacagagattttgatgaccgcagaagaccctgggagaggcaaagggat
agggatgacagagattttgatttctgcagagaaattaatggaaaccgtcttggacgagat
agaattcaaaacacctgggtcccccctcctcatcctcgggtttttgatttttttgaaggg
gccacttctcaacgaaaaggtgataacgtgcctcaggttaatggtgaaaataccgagaga
catgcccaaccaccacctttaccagtacagaatgatcctgaactttatgaaaaactgaca
tcttcaagtgaaataaacaaggagaagagtgacacagttgctgatatagaaagtgaacca
gtggtagaaagcacagaaactgaggggacataa
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