Mirounga leonina (Southern elephant seal): 118004960
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Entry
118004960 CDS
T07472
Symbol
PDZRN3
Name
(RefSeq) E3 ubiquitin-protein ligase PDZRN3 isoform X1
KO
K15682
ligand of Numb protein X 3/4 [EC:
2.3.2.27
]
Organism
mlx
Mirounga leonina (Southern elephant seal)
Brite
KEGG Orthology (KO) [BR:
mlx00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
mlx04121
]
118004960 (PDZRN3)
Enzymes [BR:
mlx01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
118004960 (PDZRN3)
Ubiquitin system [BR:
mlx04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Ligand of Numb proteins
118004960 (PDZRN3)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PDZ
PDZ_6
PDZ_2
zf-C3HC4_2
zf-C3HC4
zf-RING_UBOX
zf-RING_2
zf-TRAF
zf-C3HC4_3
Sina_ZnF
zf-C3HC4_4
zf-RING_5
TRAF3_RING
Prok-RING_4
PDZ_Tricorn
CEP104_ZnF
Motif
Other DBs
NCBI-GeneID:
118004960
NCBI-ProteinID:
XP_034852439
LinkDB
All DBs
Position
Unknown
AA seq
1066 aa
AA seq
DB search
MGFELDRFDGDVDPDLKCALCHKVLEDPLTTPCGHVFCAGCVLPWVVQEGSCPARCRGRL
SAKELNHVLPLKRLILKLDIKCAHAARGCSRVVKLQQLPEHLERCDFAPARCRHAGCGQV
LLRRDLEAHMRDACDARPVGRCQEGCGLPLTHGEQRAGGHCCARALRAHNAALQARLGAL
HKALKKEALRAGKREKSLVAQLAAAQLELQMTALRYQKKFTEYSARLDSLSRCVAAPPGG
KGEETKSLTLVLHRDSGSLGFNIIGGRPCVDNQDGSSTEGIFVSKIVDSGPAAKDGGLQI
HDRIIEVNGKDLSRATHDQAVEAFKTAKEPIVVQVLRRTPRTKMFTPPSESQLVDTGTQT
DITFEHIMALTKMSSPTPPVLDPYLLPEEHPSAHEYYDPSDYIGGVHQEMDREELELEEV
DLYRMNSQDKLGLTVCYRTDDEDDIGIYISEIDPNSIAAKDGRIREGDRIIQINGIEVQN
REEAVALLTSEENKNFSLLIARPELQLDEGWMDDDRNDFLDHLHMDMLEEQHHQAMQFTA
SVLQQKKHEEDGGTTDTATILSNQHEKDSGVGRTDESTRNDESSEQENNGDDATASSTPL
AGQRKLTCSQDTLGSGDLPFSNESFLSADCTDADYLGIPVDECERFRELLELKCQAKSSS
PYSLYYASSPLDASKSDPESVDKELELLNEELRSIELECLSIVRAHKMQQLREQYRESWM
LHNSGFRNYNTSIDVRRHELSDITELPEKSDKDSSSAYNTGESCRSTPLTLEMSPDNSLR
RVAEGSSCAGSEGAAGSMEAYGPAPKNLLSITEDPEVGSASYSPPPPPRELEAGPAPESR
ERRPSDDSGSPGPKLGGSYLPPFPHSPYKHAHIPAHAQHYQSYMQLIQQKSAVEYAQSQM
SLVSMCKDLASAGQAEARMEWKVKVRSDGTRYITKRPVRDRLLRERALKIREERSGMTTD
DDAVSELKLGRYWSREERKQHVVRAKEQKRRREFMMQSRLDCLKEQQAADDRKEMNILEL
SHKKMMKKRNKKIFDNWMTIQELLTHGTKSPDGTRVYNSFLSVTTV
NT seq
3201 nt
NT seq
+upstream
nt +downstream
nt
atgggcttcgagctggaccgcttcgacggcgacgtggacccggacctgaagtgcgcactg
tgccacaaggtcttggaggacccgctgaccacgccgtgcggccacgtcttctgcgccggc
tgcgtgttgccttgggtggtgcaggagggcagctgcccggcgcgctgccgcggccgtctg
tcggccaaggagctcaaccacgtcctgccgctcaagcgcctcatcctcaagctggacatc
aagtgcgcgcacgcggcgcgcggctgcagccgagtggtcaagctgcagcagctgcccgag
cacctcgagcgctgcgacttcgcgcccgcgcgctgccgccacgcgggctgcggccaggtg
ctgttgcggcgcgacttggaggcgcacatgcgcgacgcgtgcgacgcgcggccggtgggc
cgctgccaagagggctgcgggctgcccctgacgcacggcgagcagcgcgcgggcggccac
tgctgcgcgcgggccctgcgggcgcacaacgcggcgctgcaggcccgcctgggcgcgctg
cacaaggcgctcaagaaggaggcgctgcgcgcgggcaagcgcgagaagtcgctggtggcg
cagctggccgcggcgcagctggagctgcagatgaccgccctgcgctaccaaaagaagttc
accgagtacagcgcgcgtctcgactcgctcagccgctgcgtggccgcgccgcccggcggc
aagggtgaagaaaccaaaagtctgactcttgtcctacatcgggactctggctccctggga
ttcaatattattggtggccggccgtgtgtggacaaccaagatggatcgtccactgaagga
atctttgtatccaaaatagttgacagtgggcccgcagccaaggacggaggcctgcaaatt
catgacaggattattgaggtcaacggtaaagacttatccagagcgactcatgaccaggct
gtggaagctttcaagaccgccaaagagcccattgtggtgcaggtgttgaggagaacgcct
cggaccaaaatgttcacacctccgtcagagtcgcagctggtggacacgggaactcaaacc
gacatcaccttcgagcacatcatggcgctcaccaagatgtcctctcccaccccgcctgtg
ctggatccctatctcctgccagaggagcacccctcggcccacgagtactatgaccccagt
gactacattggaggtgtccatcaggaaatggacagggaggaactggagttggaggaagtg
gatctctacagaatgaacagccaggacaagctgggcctcacggtgtgctaccggactgat
gatgaagatgacattgggatttacataagtgagatcgaccctaacagcattgcggccaag
gatgggcgcatccgagaaggagaccgcattatccagattaatgggatagaggtacagaac
cgtgaagaggctgtggctctcctaaccagtgaagaaaacaagaacttttccttgctgatt
gcaaggcccgaactccagctggacgagggctggatggacgacgaccgaaacgactttctg
gaccacttgcacatggacatgctggaggagcagcaccaccaggccatgcagttcactgcc
agcgtgctgcagcagaagaagcatgaagaagacggggggaccacagatacagccaccatc
ctgtccaaccagcacgagaaggacagcggcgtgggacgcacggacgagagcacgcgcaat
gacgagagctcggagcaagagaacaacggggacgatgccaccgcgtcatccaccccgctg
gccgggcagaggaagctcacgtgcagccaggacaccctcggcagcggcgacctgccgttc
agcaacgagtccttcctgtcggccgactgcactgacgctgactacctgggcatccccgtg
gacgagtgcgagcggttccgggagctcctggagctcaagtgccaggccaagagcagcagc
ccctacagcctgtactacgccagcagccccctggatgccagcaagagcgaccctgagagc
gtggacaaggagctggagctgctgaacgaggagctgcgcagcatcgagctggagtgcctg
agcatcgtgcgggcgcacaagatgcagcagctccgggagcagtaccgcgagtcgtggatg
ctgcacaatagcggcttccgcaactacaacaccagcatcgacgtccgcaggcacgagctg
tcggacatcaccgagctccccgagaagtccgacaaagacagctcgagcgcctacaacacg
ggcgagagctgccgcagcaccccactcaccctggaaatgtcccccgacaactccctgagg
agagtggcagagggcagcagctgcgcgggcagcgagggggccgcgggaagcatggaagcc
tacgggccagcccccaagaacctgctctccatcacggaagatccggaggtgggcagcgcc
agctacagcccgccgcctcctcctcgagagctggaggccggcccagccccggaaagcagg
gagcggaggcccagcgacgacagcgggagccccggccccaagctgggcggctcctacctg
ccgcccttcccgcactcgccctacaaacacgcccacatcccggcgcacgcgcagcactac
cagagctacatgcagctgatccagcagaagtcggccgtggagtacgcgcagagccagatg
agcctggtgagcatgtgcaaggacctggcctcggccggccaggcggaagccaggatggag
tggaaggtgaaggtccgcagcgacggcacgcgctacatcaccaagcggccggtgcgggac
cgcctgctgcgcgagcgcgcgctcaagatccgcgaggagcgcagcggcatgaccaccgac
gacgacgcggtgagcgagctgaagctggggcgctactggagcagagaggagaggaagcag
cacgtggtgagggccaaggagcagaagcgcaggcgcgagttcatgatgcagagccggctg
gactgcctgaaggagcagcaagccgccgacgacaggaaggagatgaacatccttgaactg
agccacaaaaagatgatgaagaagaggaacaaaaagatatttgacaattggatgacaatc
caagaactcttaacccacggcacaaagtcaccagatggcacgagagtatacaattccttc
ttgtccgtgactactgtataa
DBGET
integrated database retrieval system
