Mirounga leonina (Southern elephant seal): 118005879
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Entry
118005879 CDS
T07472
Symbol
XAB2
Name
(RefSeq) pre-mRNA-splicing factor SYF1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
mlx
Mirounga leonina (Southern elephant seal)
Pathway
mlx03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mlx00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
118005879 (XAB2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mlx03019
]
118005879 (XAB2)
03041 Spliceosome [BR:
mlx03041
]
118005879 (XAB2)
Messenger RNA biogenesis [BR:
mlx03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
118005879 (XAB2)
Spliceosome [BR:
mlx03041
]
Complex B
Other components
Prp19-related factors
118005879 (XAB2)
Complex C
118005879 (XAB2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
HAT_PRP39_N
TPR_14
TPR_12
TPR_2
TPR_8
Suf
TPR_19
TPR_15
ARM_TT21
ARM_TT21_C
TPR_1
TPR_NPHP3
Motif
Other DBs
NCBI-GeneID:
118005879
NCBI-ProteinID:
XP_034854115
LinkDB
All DBs
Position
Unknown
AA seq
855 aa
AA seq
DB search
MVVMARVSRPQRPDLVFEEEDLPYEEEIMRNQFSVKCWLRYIEFKQGAPKPRLNQLYERA
LKLLPCSYKLWYRYLKARRAQVKRRCVTDPAYEDANNCHERAFVFMHKMPRLWLDYCQFL
MDQGRVTHTRRTFDRALRALPITQHSRIWPLYLRFLRSHPLPETAVRGYRRFLKLSPESA
EEYIEYLKSSDRLDEAAQRLATVVNDERFVSKAGKSNYQLWHELCDLISQNPDKVQSLNV
DAIIRGGLTRFTDQLGKLWCSLADYYIRSGHFEKARDVYEEAIRTVMTVRDFTQVFDSYA
QFEESMIAAKMETASELGREEEDDVDLELRLARFEQLISRRPLLLNSVLLRQNPHHVHEW
HKRVALHQGRPREIINTYTEAVQTVDPFKATGKPHTLWVAFAKFYEDNGQLDDARIILEK
ATKVSFRQVDDLASVWCECGELELRHENYDQALRLLRKATALPARRAEYFDGSEPVQNRV
YKSLKVWSMLADLEESLGTFQSTKAVYDRILDLRIATPQIVINYAMFLEEHKYFEESFKA
YERGISLFKWPNVSDIWSTYLTKFIARYGGRKLERARDLFEQALDGCPPKYAKTLYLLYA
QLEEEWGLARHAMAVYERATRAVEPAQQYDMFNIYIKRAAEIYGVTHTRGIYQKAIEVLS
DEHAREMCLRFADMECRLGEIDRARAIYSFCSQICDPRTTGAFWQTWKDFEVRHGNEDTI
REMLRIRRSVQATYNTQVNFMASQMLKVSGSATGTVSDLAPGQSGMDDMKLLEQRAEQLA
AEAERDQPPRAQSKILFVRSDASREELAELAQQANPEEIELGEDEDEDEMDLEPNEVRLE
QQSVPAAVFGSLKED
NT seq
2568 nt
NT seq
+upstream
nt +downstream
nt
atggtggtgatggcgcgtgtttcccggccgcagcggccggacctcgttttcgaggaagag
gacctcccctatgaggaggagatcatgcggaaccagttctcggtcaagtgctggctccgc
tacattgagttcaaacaaggtgccccaaagcccaggctcaaccagctgtatgagcgggcg
ctgaagctgctgccctgcagctacaaactctggtaccgatacctgaaggcacgccgggca
caggtgaagcgtcgctgcgtgactgaccctgcctacgaagatgccaacaactgccacgag
agggcctttgtgttcatgcacaagatgccccgtctgtggctggactactgccagttcctg
atggaccagggccgcgtcacgcacacccgccgcacgtttgaccgtgccctccgggcgctg
cccatcacgcagcactctcgtatctggccgctgtacctgcgcttcctccgctcgcacccg
ctgcctgagacagccgtgcggggctaccggcgcttcctcaagcttagccccgagagcgca
gaggagtacatcgagtacctcaagtccagcgaccggctggatgaagccgcgcagcgcctg
gccaccgtggtcaatgatgagcgcttcgtgtccaaggccggcaagtccaactaccagctg
tggcacgagctctgtgacctcatctcccagaatccagacaaggtgcagtcgctcaatgtg
gatgccatcatccgcgggggcctcacccgcttcactgaccagctaggcaagctctggtgc
tcgctggctgactactacatccgcagcggccacttcgagaaggctcgagatgtgtatgag
gaggccatccggaccgtgatgaccgtgcgggacttcacccaggtgttcgacagctatgcc
cagtttgaggagagcatgattgcagccaagatggagacagcctcagaattggggcgggag
gaagaagatgacgtggacctggagctgcgcctggcccgcttcgagcagctcatcagccgg
cggcccctgctcctcaacagcgtcttgctgcgtcagaacccgcaccacgtgcacgagtgg
cacaagcgcgtggccctgcaccagggccgcccccgggagatcatcaacacatacacggag
gctgtgcagacggtggacccgttcaaggcgacaggcaagccccacacgctgtgggtcgcg
tttgccaagttttacgaggacaacggacagctggacgatgcccgcatcatcctggagaag
gccaccaaggtgagcttcaggcaggtggacgacctggccagcgtgtggtgtgagtgtggc
gagctggagctccggcacgagaactatgaccaggccttgcggttgttgcggaaggccacc
gcgctgcccgcccgccgagccgagtactttgacggctcggagcccgtgcagaaccgtgtg
tacaagtcgctgaaggtgtggtcgatgctcgctgacctagaggagagcctgggcaccttc
cagtccaccaaggccgtgtatgaccgcatcctggacctgcgcatcgccacgccccagatc
gtcatcaactacgccatgttcctggaggagcacaagtacttcgaggagagcttcaaggcg
tacgagcgcggcatctcgctgttcaagtggcccaacgtgtccgacatctggagcacctac
ctgaccaagttcatcgcccgctacgggggccgcaagctggagcgagcgcgggacctcttt
gaacaggcgctggacggctgtcctcccaaatacgccaagacgctgtacctgctgtacgcg
cagctggaggaggagtggggcctggcccggcacgccatggctgtgtacgagcgcgccacc
agggccgtggagcccgcgcagcagtacgacatgttcaacatctacatcaagcgcgcagcc
gagatctacggcgtcacccacacccgcggcatctaccagaaggccattgaggtgctgtcg
gatgagcacgcccgggagatgtgcctgcggttcgcggacatggagtgcaggcttggcgag
atcgaccgggcacgcgccatctacagcttctgctcccagatctgtgacccccggaccact
ggggctttctggcaaacgtggaaggacttcgaggtccggcacggcaacgaggacaccatc
cgggagatgctgcggatccgccgcagcgtgcaggccacatacaacactcaggtcaacttc
atggcctcgcagatgctcaaggtgtcgggcagcgccacgggcaccgtgtctgacctggcc
cctgggcagagcggcatggatgacatgaagctgctggagcagcgggcagagcagctagct
gctgaggccgagcgggaccagcccccacgggcccagagcaagatcctgtttgtgaggagc
gacgcctcccgggaagagctggccgagctggcccagcaagccaacccggaggagattgag
ctgggcgaggacgaggacgaggacgagatggacctggagcccaatgaggtgcggctggag
cagcagagtgtgccagccgccgtgttcgggagcctgaaggaggactga
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